View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_low_2 (Length: 566)
Name: NF3567_low_2
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 14 - 503
Target Start/End: Original strand, 7867036 - 7867504
Alignment:
| Q |
14 |
atatatcaattaaaaagggaaaggaaattattatccattattnnnnnnnnttaagttttagtacatgtgatgctcttttgactgtaagaaaataaaatag |
113 |
Q |
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| T |
7867036 |
atatatcaattaaaaagggaaaggaaattattatccattattaaaaaaagttaagttttagtacatgtgatgctcttttgactgtaagaaaataaaatag |
7867135 |
T |
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| Q |
114 |
tattaggaaaactgtcctgaaaaaattggtatgatgaaattgatgaagttagtaatctcagacctaaactaaagttcaatttgaagaatattctacagtt |
213 |
Q |
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| T |
7867136 |
tattaggaaaactgtcctgaaaaaattggtatgatgaaattgataaagttagtaatttcagacctaaactaaagttcaatttgaagaatattctacagtt |
7867235 |
T |
|
| Q |
214 |
gagtacataagactttgttaattatattcatagtttatatttgtatgaaagctacataagtttttgttaaattaatgcagtgtaactaataagagtaaca |
313 |
Q |
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| T |
7867236 |
gagtacataagactttgttaattatattcatagtttatatttgtatgaaa---------------------ttaatgcagtgtaactaataagagtaaca |
7867314 |
T |
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| Q |
314 |
agagttaaccttctctcccataacttcttgaatttgtgcaacatcactagcaattccatgcataatatcacctgtattgatatctgtatcnnnnnnnctt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7867315 |
agagttaaccttctctcccataacttcttgaatttgtgcaacatcactagcaattccatgcataatatcacctgtattgatatctgtatcaaaaaaactt |
7867414 |
T |
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| Q |
414 |
atgtcttgtctaagaattgctcttagatattcagttctgattctttgtgcagatctctcccccactaacctccaacatgtgatctctgcc |
503 |
Q |
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| T |
7867415 |
atgtcttgtctaagaattgctcttagatattcagttctgattctttgtgcagatctctcccccactaacctccaacatgtgatctctgcc |
7867504 |
T |
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