View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_low_3 (Length: 486)
Name: NF3567_low_3
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 23 - 376
Target Start/End: Complemental strand, 28467183 - 28466830
Alignment:
| Q |
23 |
agaaaacatgatttaatgtaattacatgtgtcggtgtcgaatacactaggtttatcattcatgcaaagcatctacgagtacaaccgttccgttgaatact |
122 |
Q |
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| T |
28467183 |
agaaaacatgatttaatgtaattacatgtgtcggtgtcggatacactgggtttatcattcatgcaaagcatctacaagtacaaccgttccgttgaatact |
28467084 |
T |
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| Q |
123 |
gatagcatcggaactctaatagcattggacattaatttgattttgaaaacctggagaaattagaaaagatgaagaagttagttaccggtgagattgtagg |
222 |
Q |
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| T |
28467083 |
gatagcatcggaactctaatagcattggacattaagttgattttgaaaacctggagaaattagaaaagatgaagaagttagttaccggtgagattgtagg |
28466984 |
T |
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| Q |
223 |
ggtagttttcgttttttgttatcgagagcacgatactctatagatttctgatggtaatctttaaatttctggtacaatctaacatcggaatcattattac |
322 |
Q |
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| T |
28466983 |
ggtagttttcgttttctgttatcgagagcacgatactctatagatttctgatggtaatctttaaatttctggtacaatctaacatcggaatcattattac |
28466884 |
T |
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| Q |
323 |
gaacgaagtccaaaggatttacaccatcgccaaagatgaattgatcatcttcat |
376 |
Q |
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| T |
28466883 |
gaacgaagtccaaaggatttacaccatcgccaaagatgaattgatcatcttcat |
28466830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 176 - 389
Target Start/End: Complemental strand, 28485472 - 28485259
Alignment:
| Q |
176 |
gagaaattagaaaagatgaagaagttagttaccggtgagattgtaggggtagttttcgttttttgttatcgagagcacgatactctatagatttctgatg |
275 |
Q |
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| T |
28485472 |
gagaaattagaaaagatgaagaagttagttaccggtgaggttgcaggggtaattttcgctttctgttatcgagagctcggtattcgatggatttctgatg |
28485373 |
T |
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| Q |
276 |
gtaatctttaaatttctggtacaatctaacatcggaatcattattacgaacgaagtccaaaggatttacaccatcgccaaagatgaattgatcatcttca |
375 |
Q |
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| T |
28485372 |
gtaatctttaaatttctggtacaaattaacaccggaatcattgttacgaacgaagtctaaaggatttacaccggcgccgaagataaattgatcatcttca |
28485273 |
T |
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| Q |
376 |
tccacagtatcgtt |
389 |
Q |
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| T |
28485272 |
tccacagtatcgtt |
28485259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 165 - 347
Target Start/End: Complemental strand, 30684741 - 30684562
Alignment:
| Q |
165 |
ttgaaaacctggagaaattagaaaagatgaagaagttagttaccggtgagattgtaggggtagttttcgttttttgttatcgagagcacgatactctata |
264 |
Q |
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| T |
30684741 |
ttgaaaccctagagaaattaaaaaggatgaag---ttagttaccgatgaggttgttgcggtggttttcgctttctgttatcgagagctcggtactgtatc |
30684645 |
T |
|
| Q |
265 |
gatttctgatggtaatctttaaatttctggtacaatctaacatcggaatcattattacgaacgaagtccaaaggatttacacc |
347 |
Q |
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| T |
30684644 |
gatttctggtggtaatcttctaatttctggtacaattgaacactggaatcattgttacgtacgaagtccaacggatttacacc |
30684562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 44318191 - 44318142
Alignment:
| Q |
411 |
gtcgctgttggaagtgagttcgtcgaggaagaagagagagttgttgttgt |
460 |
Q |
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| T |
44318191 |
gtcgctgttggaagtgagttcgtcgaggaagaagagagagttgttgttgt |
44318142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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