View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3567_low_5 (Length: 453)
Name: NF3567_low_5
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3567_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 110 - 435
Target Start/End: Complemental strand, 9542555 - 9542230
Alignment:
| Q |
110 |
tttgtgagtcgtctgatcaaaatcaaacggtttggattgattaacaatggatatctgcgactgcatggaatcgaattccgtcacgttgataagataaaac |
209 |
Q |
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| T |
9542555 |
tttgtgagtcgtctgatcaaaatcaaacggtttggattgattaacaatggatatccgcgactgcatggaatcgaattccgtcacgttgataagataaaac |
9542456 |
T |
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| Q |
210 |
aaaaataacataactgttttgggggactgaattgaacaaagagggagatgagttatcatctcttggtaagcacattcatccttctcagtcaactgaacaa |
309 |
Q |
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| T |
9542455 |
aaaaataacataactgttttgggggactgaattgaacaaagagggagatgagttatcatctcttggtaagcacattcatccttctcagtcaactgaacaa |
9542356 |
T |
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| Q |
310 |
ttccatcaagtacaagcactttcccatatgttaatgactacaaaaccaaaacaattggtgttaatcaattatattaagaaaaagaaatcttgtgtaccaa |
409 |
Q |
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| T |
9542355 |
ttccatcaagtacaagcactttcccatatgttaatgactacaaaaccaaaacaattggtgttaattaattatattaagaaaaagaaatcttgtgtaccaa |
9542256 |
T |
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| Q |
410 |
gtaagatgaagatgttatacctcaaa |
435 |
Q |
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| T |
9542255 |
gtaagatgaagatgttatacctcaaa |
9542230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 9542654 - 9542598
Alignment:
| Q |
11 |
cagagagaattgaactctatacgttgagattacaaaatcaagctcttaccaacttgg |
67 |
Q |
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| T |
9542654 |
cagagagaattgaactctataccttgagattacaaaatcaagctcttaccaacttgg |
9542598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 41401507 - 41401629
Alignment:
| Q |
226 |
ttttgggggactgaattgaacaaagagggagatgagttatcatctcttggtaagcacattcatccttctcagtcaactgaacaattccatcaagtacaag |
325 |
Q |
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||||||||||| |||| ||||| || || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
41401507 |
ttttgggggacggaatggaacagaggggaagatgagctatcatctcctggtaagcacattcatccttctcagtcaactgaacaatcccatcaagtacgag |
41401606 |
T |
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| Q |
326 |
cactttcccatatgttaatgact |
348 |
Q |
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| T |
41401607 |
aactttcccatatgttaatgact |
41401629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 14954753 - 14954701
Alignment:
| Q |
238 |
gaattgaacaaagagggagatgagttatcatctcttggtaagcacattcatcc |
290 |
Q |
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| T |
14954753 |
gaattgagcaaagaggaagatgagtgatcatctcttggtacgcacactcatcc |
14954701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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