View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3567_low_7 (Length: 361)

Name: NF3567_low_7
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3567_low_7
NF3567_low_7
[»] chr1 (2 HSPs)
chr1 (1-361)||(18066126-18066486)
chr1 (41-85)||(5268336-5268380)
[»] scaffold0718 (1 HSPs)
scaffold0718 (189-334)||(3534-3681)
[»] chr8 (1 HSPs)
chr8 (41-108)||(32994141-32994208)
[»] chr6 (3 HSPs)
chr6 (41-91)||(3525042-3525092)
chr6 (41-98)||(19260794-19260851)
chr6 (42-91)||(46206-46255)
[»] chr3 (3 HSPs)
chr3 (41-89)||(44958562-44958610)
chr3 (41-91)||(30958154-30958204)
chr3 (41-91)||(30973966-30974016)
[»] chr2 (1 HSPs)
chr2 (32-91)||(38129431-38129490)
[»] chr7 (1 HSPs)
chr7 (41-91)||(40491695-40491745)
[»] chr4 (1 HSPs)
chr4 (41-91)||(38740292-38740342)
[»] chr5 (2 HSPs)
chr5 (41-98)||(14671141-14671198)
chr5 (41-93)||(14299443-14299495)


Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 18066126 - 18066486
Alignment:
Q  1 ccctacgcctcttgaaatgattttcagactcatttattggtcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataatttttca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066126 ccctacacctcttgaaatgattttcagactcatttattggtcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataatttttca 18066225  T
Q  101 tcactgcaaagtcattttatgtgtggataacttgtagaattttattttcttgcagatcttgctgtagaacctattagtgttttgttagaaaggttagatc 200  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066226 tcactgcaaaatcattttatgtgtggataacttatagaattttattttcttgcagatcttgctgtagaacctattagtgttttgttagaaaggttagatc 18066325  T
Q  201 aagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttttgttacagttgtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066326 aagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttttgttacagttgtat 18066425  T
Q  301 gatgcttggaaaatgtatagagttggtcatcaaatatgaattttatgttatttttaatgtt 361  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18066426 gatgcttgggaaatgtatagagttggtcatcaaatatgagttttatgttatttttaatgtt 18066486  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 5268336 - 5268380
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcatt 85  Q
    ||||||||||||||| ||||| |||||||||| ||||| ||||||    
T  5268336 tcaactcacttttaggcagaatcaattttacaagatcagttcatt 5268380  T

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Target: scaffold0718 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 189 - 334
Target Start/End: Complemental strand, 3681 - 3534
Alignment:
Q  189 aaaggttagatcaagagaatttcgctaaggtttgtacttgaaactctctgttgtgaacttcaaggagcttaaagttgaataaaaatttcatatatttt-t 287  Q
    ||||||| || ||||||| ||| |||||| |||| |||| ||||||| ||||||  ||||||||  ||||||||||||||||||||||||||| |||| |    
T  3681 aaaggttggagcaagagacttttgctaagctttggacttaaaactctttgttgtttacttcaagtggcttaaagttgaataaaaatttcatattttttgt 3582  T
Q  288 gttacagttgtatgatgcttggaaaatgt-atagagttggtcatcaaa 334  Q
    ||||| ||||| || | || |||||||||  |||||||||| ||||||    
T  3581 gttacggttgtttgctcctcggaaaatgtcttagagttggttatcaaa 3534  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 32994208 - 32994141
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataatttttcatcactgca 108  Q
    |||||||||||| |||||||| ||||||||||  |||| |||||||||||| | || |||||||||||    
T  32994208 tcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaattgtcatcactgca 32994141  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 3525042 - 3525092
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    |||||||||||||||||| || ||||||||||  |||||||||||||||||    
T  3525042 tcaactcacttttagccacaatcaattttacataatcaattcattcaaaat 3525092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 19260851 - 19260794
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataattttt 98  Q
    |||||||| |||||||||||| ||||||||||| | ||| ||||||||||| ||||||    
T  19260851 tcaactcaattttagccagaatcaattttacagaaccaaatcattcaaaatcattttt 19260794  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 46255 - 46206
Alignment:
Q  42 caactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    ||||||||||||||  |||| ||||||||||| ||||||||| |||||||    
T  46255 caactcacttttagttagaatcaattttacagaatcaattcactcaaaat 46206  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 44958610 - 44958562
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaa 89  Q
    |||||||||||||||||| || |||||||||| |||||||||| |||||    
T  44958610 tcaactcacttttagccaaaatcaattttacatgatcaattcactcaaa 44958562  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 30958154 - 30958204
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    ||||||||| |||||||| || ||||||||||  |||||||||||||||||    
T  30958154 tcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30958204  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 30973966 - 30974016
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    ||||||||| |||||||| || ||||||||||  |||||||||||||||||    
T  30973966 tcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30974016  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 38129490 - 38129431
Alignment:
Q  32 atttattggtcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    |||||||| ||| |||||||||||  |||| | ||||||||| |||||||||||||||||    
T  38129490 atttattgttcatctcacttttagttagaatccattttacagaatcaattcattcaaaat 38129431  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 40491695 - 40491745
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    ||||||||||||||| || || ||||||||||| ||||||||| |||||||    
T  40491695 tcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaat 40491745  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 38740342 - 38740292
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaat 91  Q
    |||||||||||||| ||| || ||||||||||  |||||||||||||||||    
T  38740342 tcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaat 38740292  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 14671141 - 14671198
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataattttt 98  Q
    |||| ||||||||||||| || |||||| |||  ||||||||||||||||| ||||||    
T  14671141 tcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcattttt 14671198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 14299443 - 14299495
Alignment:
Q  41 tcaactcacttttagccagaaacaattttacaggatcaattcattcaaaataa 93  Q
    |||||||||||||| | |||| ||||||||||  ||||||||| |||||||||    
T  14299443 tcaactcacttttatctagaatcaattttacacaatcaattcactcaaaataa 14299495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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