View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3567_low_8 (Length: 355)

Name: NF3567_low_8
Description: NF3567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3567_low_8
NF3567_low_8
[»] chr1 (6 HSPs)
chr1 (1-183)||(18065919-18066101)
chr1 (67-127)||(18066077-18066137)
chr1 (262-336)||(18065767-18065840)
chr1 (26-88)||(28083937-28083999)
chr1 (26-87)||(6021779-6021840)
chr1 (28-65)||(15515121-15515158)
[»] chr5 (1 HSPs)
chr5 (26-166)||(34250400-34250540)
[»] chr2 (4 HSPs)
chr2 (26-87)||(22535973-22536034)
chr2 (26-83)||(10618990-10619047)
chr2 (28-65)||(21234576-21234613)
chr2 (53-158)||(37420273-37420378)
[»] chr3 (4 HSPs)
chr3 (28-87)||(41115413-41115472)
chr3 (26-88)||(7717370-7717432)
chr3 (69-165)||(7717465-7717561)
chr3 (94-174)||(52925728-52925808)
[»] chr6 (2 HSPs)
chr6 (26-88)||(1485195-1485257)
chr6 (26-86)||(26280581-26280641)
[»] chr4 (2 HSPs)
chr4 (26-88)||(32818419-32818481)
chr4 (29-84)||(29779106-29779161)
[»] chr8 (1 HSPs)
chr8 (26-62)||(35494990-35495026)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18066101 - 18065919
Alignment:
Q  1 ctggagtagaattgattaggcctttatcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactccagcccaaccaa 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18066101 ctggagtagaattgatttggcctttatcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattatactccagcccaaccaa 18066002  T
Q  101 atgtgtccaaatcaaccctacgcctctagaatcaattttaaatcattcaaaagtggaacctaacatacaataaaatttgcaat 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18066001 atgtgtccaaatcaaccctacgcctctagaatcaattttaaatcattcaaaagtggaacctaacatacaataaaatttgcaat 18065919  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 18066077 - 18066137
Alignment:
Q  67 aaaggccaaatcaattctactccagcccaaccaaatgtgtccaaatcaaccctacgcctct 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18066077 aaaggccaaatcaattctactccagcccaaccaaatgtgtccaaatcaaccctacacctct 18066137  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 18065840 - 18065767
Alignment:
Q  262 gtctgattttctagctaaacgaaggttgaaaattgaaacctatgaagcactcacacatacaccagcaacactaac 336  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  18065840 gtctgattttctagctaaac-aagattgaaaattgaaacctatgaagcacttacacagacaccagcaacactaac 18065767  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 28083937 - 28083999
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactc 88  Q
    |||||||||| ||||||||||||||| ||||||||||||   ||| | |||||||||||||||    
T  28083937 atcaaaagctacaaattctagcttcaagtagaatcaattacgaagacaaaatcaattctactc 28083999  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 6021840 - 6021779
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctact 87  Q
    |||||||||| || || ||||||||| |||||||| |||| | |||| ||||||||||||||    
T  6021840 atcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatcaattctact 6021779  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 15515121 - 15515158
Alignment:
Q  28 caaaagcttcaaattctagcttcatgtagaatcaattc 65  Q
    ||||| || |||||||||||||||||||||||||||||    
T  15515121 caaaacctacaaattctagcttcatgtagaatcaattc 15515158  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 34250400 - 34250540
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactccagcccaaccaaatgtgtccaaatcaaccctacgcct 125  Q
    |||||||||| ||| ||||||| ||| ||||||||||||| | ||||  |||||||||||||| ||   |||||||  |||| ||| |||  |||| | |    
T  34250400 atcaaaagctacaatttctagcatcaagtagaatcaattctagaggcataatcaattctactctagagaaaccaaacatgtcaaaaacaattctacacat 34250499  T
Q  126 ctagaatcaattttaaatcattcaaaagtggaacctaacat 166  Q
    |||||||||||| ||| || ||||||||||||||| |||||    
T  34250500 ctagaatcaattataactccttcaaaagtggaaccaaacat 34250540  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 22536034 - 22535973
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctact 87  Q
    ||||||||||||||||||||  |||| ||||||||||||| |||||| ||||||||||||||    
T  22536034 atcaaaagcttcaaattctaaattcaagtagaatcaattctaaaggcaaaatcaattctact 22535973  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 10618990 - 10619047
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattc 83  Q
    ||||||||||  || |||||||||||  |||||||||||| |||||| ||||||||||    
T  10618990 atcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatcaattc 10619047  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 21234576 - 21234613
Alignment:
Q  28 caaaagcttcaaattctagcttcatgtagaatcaattc 65  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  21234576 caaaagctacaaattctagcttcaagtagaatcaattc 21234613  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 37420273 - 37420378
Alignment:
Q  53 gtagaatcaattcaaaaggccaaatcaattctactccagcccaaccaaatgtgtccaaatcaaccctacgcctctagaatcaattttaaatcattcaaaa 152  Q
    ||||||||||||| | |||| ||||||||||||||| ||   | |||||  |||| |||||||  |||| ||||||||||||||||  | || | |||||    
T  37420273 gtagaatcaattctagaggcaaaatcaattctactctagggaagccaaacatgtcaaaatcaattctacacctctagaatcaatttgcactcttccaaaa 37420372  T
Q  153 gtggaa 158  Q
    ||||||    
T  37420373 gtggaa 37420378  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 41115413 - 41115472
Alignment:
Q  28 caaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctact 87  Q
    |||||||| ||||||||||||||| ||||||||||||| | | || ||||||||||||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctact 41115472  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 7717370 - 7717432
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactc 88  Q
    |||| ||||| ||| ||||||||||| |||||||||||||   |||| |||||||||||||||    
T  7717370 atcagaagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattctactc 7717432  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 7717465 - 7717561
Alignment:
Q  69 aggccaaatcaattctactccagcccaaccaaatgtgtccaaatcaaccctacgcctctagaatcaattttaaatcattcaaaagtggaacctaaca 165  Q
    |||| |||||||||||||||  |   |||||||  |||| |||||||| |||  |||||| |||||||||||  |||| ||||||||||||| ||||    
T  7717465 aggcaaaatcaattctactctggaggaaccaaacatgtcaaaatcaactctaaacctctacaatcaattttagctcatgcaaaagtggaaccaaaca 7717561  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 52925728 - 52925808
Alignment:
Q  94 caaccaaatgtgtccaaatcaaccctacgcctctagaatcaattttaaatcattcaaaagtggaacctaacatacaataaa 174  Q
    ||||||||  |||| |||||||   ||| ||||||||||||||||| | || | ||||||||||||| |||||||| ||||    
T  52925728 caaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagtggaaccgaacatacactaaa 52925808  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 1485195 - 1485257
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactc 88  Q
    |||||||||| ||| |||||| |||| ||||||||||||| |||||| |||| ||||||||||    
T  1485195 atcaaaagctccaatttctagattcaagtagaatcaattctaaaggcaaaattaattctactc 1485257  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 26280641 - 26280581
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctac 86  Q
    ||||||| || ||||||||||||||| || ||||||||||   |||| |||||||||||||    
T  26280641 atcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaatcaattctac 26280581  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 32818419 - 32818481
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattctactc 88  Q
    |||||||||| |||||||||||||||  ||||||||||||   |||| |||||||||||||||    
T  32818419 atcaaaagctacaaattctagcttcaaatagaatcaattctggaggcaaaatcaattctactc 32818481  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 29779106 - 29779161
Alignment:
Q  29 aaaagcttcaaattctagcttcatgtagaatcaattcaaaaggccaaatcaattct 84  Q
    ||||||| ||||||||||||||| ||||||||||||| | | || |||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattct 29779161  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 35495026 - 35494990
Alignment:
Q  26 atcaaaagcttcaaattctagcttcatgtagaatcaa 62  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  35495026 atcaaaagctacaaatcctagcttcatgtagaatcaa 35494990  T

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