View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3568_high_1 (Length: 498)

Name: NF3568_high_1
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3568_high_1
NF3568_high_1
[»] chr2 (3 HSPs)
chr2 (140-483)||(37216676-37217019)
chr2 (7-56)||(36870387-36870436)
chr2 (7-56)||(15803320-15803371)
[»] chr8 (3 HSPs)
chr8 (1-53)||(4266660-4266712)
chr8 (1-56)||(1839696-1839753)
chr8 (1-39)||(9054387-9054425)
[»] chr5 (1 HSPs)
chr5 (7-56)||(15917540-15917591)
[»] chr1 (4 HSPs)
chr1 (1-36)||(45752130-45752165)
chr1 (12-56)||(50097762-50097808)
chr1 (1-39)||(25561194-25561232)
chr1 (7-56)||(6538135-6538186)
[»] chr4 (3 HSPs)
chr4 (1-39)||(18397080-18397118)
chr4 (7-56)||(28880139-28880190)
chr4 (7-56)||(30307516-30307567)
[»] chr3 (6 HSPs)
chr3 (1-56)||(32720958-32721015)
chr3 (1-39)||(35283254-35283292)
chr3 (14-56)||(39966770-39966812)
chr3 (7-40)||(53888652-53888685)
chr3 (7-56)||(36637947-36637998)
chr3 (6-38)||(54089726-54089758)


Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 140 - 483
Target Start/End: Complemental strand, 37217019 - 37216676
Alignment:
Q  140 cgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacagcgacatcgtaattgacacacttgtttatgatttaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  37217019 cgaaggagatctaatttcgattcctttagttatgatttgggggatacctatagagtgaatgacggcgacattgtaattgacacacttgtttatgatttaa 37216920  T
Q  240 atgatgtctagcttaattgtgaagataatgatcgagttaggagaaattcggattctacaacgttaaataaagtgttggagttatagggtgggtagctatt 339  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37216919 atgatgtctagcttaattgtgaagataatgatcgagttaagagaaattcggattctacaacgttaaataaagtgttggagttatagggtgagtagctatt 37216820  T
Q  340 aagccagctacgagcaccgttattaaaaaggttatgaaatgtactaaggctaaggggagactagataaataatgggtgggtgaaagcgcagaattttcgg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  37216819 aagccagctacgagcaccgttattaaaaaggttatgaaatgtactaaggctagggggagactagataaataatgggtgggtgaaagcgcggaattttcgg 37216720  T
Q  440 taagaccaggataacaatgttgagaaagaggttagtgttgatta 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  37216719 taagaccaggataacaatgttgagaaagaggttagtgttgatta 37216676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 36870436 - 36870387
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaaagtatttttgtagagagtg 56  Q
    |||| ||||||||| ||||||| ||||||||||||||||| |||||||||    
T  36870436 gaaaattgagaaatttttcacaatttttgaaagtatttttttagagagtg 36870387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15803371 - 15803320
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  15803371 gaaaattgagaaatctttcacattttttgaaagagtatttttttagagagtg 15803320  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4266660 - 4266712
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaagtatttttgtagaga 53  Q
    ||||| |||| |||||||||||||||| |||||||||||||||||| ||||||    
T  4266660 atagatgaaaattgagaaatctttcactttttttgaaagtatttttttagaga 4266712  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1839696 - 1839753
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||| |||| ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  1839696 atagaggaaaattgagaaatctttcacattttttgaaagagtatttttttagagagtg 1839753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9054387 - 9054425
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  9054387 atagaggaaaattgagaaatctttcacattttttgaaag 9054425  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 15917591 - 15917540
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||| ||||||||||  |||||||||||||||||||    
T  15917591 gaaatttgagaaatctttcatattttttgaaagagtatttttgtagagagtg 15917540  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45752130 - 45752165
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttga 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  45752130 atagaagaaaattgagaaatctttcacattttttga 45752165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 50097808 - 50097762
Alignment:
Q  12 ttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||    
T  50097808 ttgagaaatctttcacattttttgaaagagtatttttttagagagtg 50097762  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25561194 - 25561232
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  25561194 atagaggaaaattgagaaatctttcacattttttgaaag 25561232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 6538186 - 6538135
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||| ||||||||||  ||||||||| |||||||||    
T  6538186 gaaaattgagaaatctttcatattttttgaaagagtatttttttagagagtg 6538135  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18397118 - 18397080
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  18397118 atagaggaaaattgagaaatctttcacattttttgaaag 18397080  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 28880190 - 28880139
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  28880190 gaaaattgagaaatcttttacattttttgaaagagtatttttttagagagtg 28880139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 30307567 - 30307516
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  30307567 gaaaattgagaaatctttcacatttttttaatgagtatttttttagagagtg 30307516  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 32720958 - 32721015
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaa--agtatttttgtagagagtg 56  Q
    ||||| |||| ||| |||||||||||||||| |||||  |||||||||||||||||||    
T  32720958 atagaggaaaattgtgaaatctttcacatttattgaaagagtatttttgtagagagtg 32721015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35283292 - 35283254
Alignment:
Q  1 atagaagaaagttgagaaatctttcacattttttgaaag 39  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  35283292 ataggagaaaattgagaaatctttcacattttttgaaag 35283254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 39966770 - 39966812
Alignment:
Q  14 gagaaatctttcacattttttgaaagtatttttgtagagagtg 56  Q
    ||||||| |||||||||||||||||||| |||| |||||||||    
T  39966770 gagaaatttttcacattttttgaaagtaattttttagagagtg 39966812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 53888685 - 53888652
Alignment:
Q  7 gaaagttgagaaatctttcacattttttgaaagt 40  Q
    |||| |||||||||||||||||||||||||||||    
T  53888685 gaaaattgagaaatctttcacattttttgaaagt 53888652  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 36637998 - 36637947
Alignment:
Q  7 gaaagttgagaaatctttcacattttttg--aaagtatttttgtagagagtg 56  Q
    |||| ||||||||||||||||||||||||  ||||||||| | |||||||||    
T  36637998 gaaaattgagaaatctttcacattttttgaaaaagtatttatttagagagtg 36637947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 54089726 - 54089758
Alignment:
Q  6 agaaagttgagaaatctttcacattttttgaaa 38  Q
    ||||| |||||||||||||||||||||||||||    
T  54089726 agaaaattgagaaatctttcacattttttgaaa 54089758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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