View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3568_high_3 (Length: 410)

Name: NF3568_high_3
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3568_high_3
NF3568_high_3
[»] chr2 (3 HSPs)
chr2 (11-386)||(12540742-12541118)
chr2 (15-168)||(16383770-16383922)
chr2 (13-172)||(5008992-5009152)
[»] chr4 (8 HSPs)
chr4 (15-169)||(6561086-6561239)
chr4 (15-168)||(36697868-36698020)
chr4 (15-172)||(34940858-34941014)
chr4 (13-168)||(14250283-14250439)
chr4 (15-158)||(13920066-13920208)
chr4 (19-111)||(43119769-43119860)
chr4 (15-112)||(1026307-1026403)
chr4 (96-168)||(5909416-5909488)
[»] scaffold0284 (1 HSPs)
scaffold0284 (15-159)||(6260-6403)
[»] chr5 (2 HSPs)
chr5 (15-112)||(13313093-13313189)
chr5 (16-154)||(22093633-22093770)
[»] chr1 (5 HSPs)
chr1 (15-172)||(18833763-18833925)
chr1 (15-167)||(8262360-8262511)
chr1 (15-168)||(24888424-24888576)
chr1 (15-98)||(11384929-11385012)
chr1 (65-115)||(21424270-21424319)
[»] scaffold0216 (1 HSPs)
scaffold0216 (14-169)||(28994-29148)
[»] scaffold0578 (1 HSPs)
scaffold0578 (13-172)||(2525-2685)
[»] chr8 (6 HSPs)
chr8 (15-172)||(9015088-9015244)
chr8 (17-169)||(12735618-12735769)
chr8 (13-86)||(40210134-40210207)
chr8 (96-168)||(17889365-17889437)
chr8 (16-91)||(36129808-36129883)
chr8 (15-48)||(8356896-8356929)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-168)||(51255-51409)
[»] chr6 (3 HSPs)
chr6 (15-168)||(27435953-27436107)
chr6 (17-169)||(6891076-6891227)
chr6 (53-158)||(15879842-15879946)
[»] chr3 (4 HSPs)
chr3 (15-168)||(20781509-20781663)
chr3 (15-170)||(38140716-38140870)
chr3 (16-112)||(37052241-37052336)
chr3 (16-107)||(48191264-48191354)
[»] chr7 (2 HSPs)
chr7 (16-90)||(45916799-45916873)
chr7 (15-91)||(18273146-18273222)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 12540742 - 12541118
Alignment:
Q  11 caaaggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgtt 110  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  12540742 caaaggtgtgtttgtttcaaggtttgtaatatgattccagaaaatgtgagattggaaatacaacattctcatgtttgttttcag-ttttgaaaatttgtt 12540840  T
Q  111 ccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctcaattgcttaa---nnnnnnnnactacaatgttttctttt 207  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||| | |||||||||||||||| ||||           ||||||||||||||||||    
T  12540841 ccaataaatcttatattcccaagaatgatatttacacatgatttcttatattgttattctcaattgtttaatttttttttttactacaatgttttctttt 12540940  T
Q  208 tgtttcaacttcactgtagttggagattttcattgacataagaaggtggtggatcacat-aaaaaatttgtcttgatcttgattcattagtaggatggta 306  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  12540941 tgtttcaacttcactgtagttggagattttcattgacatcagaaggtggtggatcacataaaaaaaattgtcttgatcttgatttattagtaggatggta 12541040  T
Q  307 gaaacnnnnnnnncatgtcctctgtaatcggtaggttaatcacctctcttgtattcaatgagtttaaaaatgtctcatac 386  Q
    |||||        |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12541041 gaaac--aaaaaacatgtcttctgtaatcggtaggttaatcacctctcttgtattcaatgtgtttaaaaatgtctcatac 12541118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 16383770 - 16383922
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||| ||||||||||||||||  || ||||||| || |||||| ||||||||||||||| ||||| || |||||||| ||||||||      
T  16383770 ggtgtgtttgtttcaatgtttgtaatatgattcatgggaatgtgagatagaaaatgcaacattctcatgttagtttcaag-ttttgaaagtttgttcccc 16383868  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
      ||| |||||||| ||| |||| ||||| ||| |||||| |||||||||||||    
T  16383869 ggaattttatatttccaaaaatgctatttacacgtgattttttctgttgttatt 16383922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 5009152 - 5008992
Alignment:
Q  13 aaggtgtgtttgtttcaaggtttgtaatat--gattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgtt 110  Q
    ||||||||||||||||||| ||||||||||  |||||| |  ||||||| |||| ||||  ||||||  |||||||||||| |||||| |||||||||||    
T  5009152 aaggtgtgtttgtttcaagatttgtaatatatgattcccgagaatgtgagattggaaatgtaacatttccatgtttgtttcaagtttt-gaaaatttgtt 5009054  T
Q  111 ccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctca 172  Q
    || |  ||| |||||||  || ||||| ||||| |||||||||| |||| ||||||||||||    
T  5009053 ccgaggaatgttatattcacaggaatgttatttacacatgatttattctattgttattctca 5008992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 6561086 - 6561239
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||||||||||||||||||||| || ||||||| |||| |||| |||||||| |||||||||||| || ||||||||||||||||| |    
T  6561086 ggtgtgtttgtttcaaggtttgtaatatgattcccgggaatgtgacattggaaatgcaacattcccatgtttgtttcaag-ttttgaaaatttgttccca 6561184  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattc 169  Q
    | ||| |||||||  || ||||| ||||| ||||| ||||||||| |||||||||    
T  6561185 tgaatgttatattcccaggaatgttatttgcacataatttcttctattgttattc 6561239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 36697868 - 36698020
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    ||||||||||||||||| |||||||||||||||| || ||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||||||  |    
T  36697868 ggtgtgtttgtttcaagatttgtaatatgattcccgggaatgtgacattggaaatgcaacattctcatgtttgtttcaag-ttttgaaaatttgttctca 36697966  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
    | ||| |||||||  || ||||| ||||| ||||| ||||||||| ||||||||    
T  36697967 tgaatgttatattcccaggaatgttatttgcacataatttcttctattgttatt 36698020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 34940858 - 34941014
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||||||||||||||||||| | || || |||| |||||||||  |||||| ||||||||||||| || |||| |||||||||||| |    
T  34940858 ggtgtgtttgtttcaaggtttgtaatatgattgccgggaacgtgagattgaaaatgtaacattttcatgtttgtttcaag-ttttaaaaatttgttccca 34940956  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctca 172  Q
      ||| |||||||| ||  |||| ||||| ||||||||||||||| ||||||||||||    
T  34940957 acaatattatatttccagaaatgttatttacacatgatttcttctattgttattctca 34941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 14250283 - 14250439
Alignment:
Q  13 aaggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaata--caacattctcatgtttgtttccagtttttgaaaatttgtt 110  Q
    ||||||||||| ||||||||||||||||||||||||  | || |||| |||  |||||  |||||||| || ||||||||| |||||| |||||||||||    
T  14250283 aaggtgtgtttatttcaaggtttgtaatatgattcctaggaacgtgagattagaaatatgcaacattcccacgtttgtttcaagtttt-gaaaatttgtt 14250381  T
Q  111 ccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
    || || ||| ||||||| | | ||||| ||||| |||||| |||||||| ||||||||    
T  14250382 cccatgaatattatattatgaggaatgttatttacacatgttttcttctattgttatt 14250439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 13920066 - 13920208
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    ||||||||| ||| ||| ||||||||||||||    | ||||||| |||  |||| ||||||||||||||||||||| |||||| ||||||||||| | |    
T  13920066 ggtgtgtttatttgaagatttgtaatatgatttgtaggaatgtgagattagaaatgcaacattctcatgtttgtttcaagtttt-gaaaatttgttacca 13920164  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttc 158  Q
    | ||| ||||||| |||| |||| ||||| |||||| |||||||    
T  13920165 tgaatgttatattctcaaaaatgttatttacacatgttttcttc 13920208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 43119769 - 43119860
Alignment:
Q  19 tgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttc 111  Q
    ||||||||||||||||| ||||||||||   || ||||||| |||| |||| ||||||||||||||||||||  || ||||||||| ||||||    
T  43119769 tgtttgtttcaaggtttataatatgatttttggtaatgtgagattggaaatgcaacattctcatgtttgttttaag-ttttgaaaaattgttc 43119860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 1026403 - 1026307
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||||||||||  ||| |||||| |||   |  ||| ||| |||| |||| ||||||||||||||||||||| || |||| ||||||||||||    
T  1026403 ggtgtgtttgtttcaaaatttataatataattatcgcgaatatgagattggaaatgcaacattctcatgtttgtttcaag-ttttaaaaatttgttcc 1026307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 5909416 - 5909488
Alignment:
Q  96 ttttgaaaatttgttccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
    ||||||||||||||| |    ||| ||||||||||||||||| |||||  |||||||||||||| || |||||    
T  5909416 ttttgaaaatttgtttcggcgaattttatattttcaagaatgttatttaaacatgatttcttctattattatt 5909488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 6403 - 6260
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||||||||||||||||||||| || ||||||| |||| |||| ||||||||||||||||||||| || ||||||||||||||||| |    
T  6403 ggtgtgtttgtttcaaggtttgtaatatgattcccgggaatgtgacattggaaatgcaacattctcatgtttgtttcaag-ttttgaaaatttgttccca 6305  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttct 159  Q
    | ||| || ||||   | ||||| ||||| ||||| |||||||||    
T  6304 tgaatgttttattccgaggaatgttatttgcacataatttcttct 6260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 13313189 - 13313093
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||||||||||||||| |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||| || |||||||||||||||||    
T  13313189 ggtgtgtttgtttcaaggtttataatatgattcccggaaatgtgagattggaaatgcaacattctcatgtttgtttcaag-ttttgaaaatttgttcc 13313093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 22093633 - 22093770
Alignment:
Q  16 gtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaat 115  Q
    ||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||| |||  ||||||| |||| || ||||||||||||||||| ||    
T  22093633 gtgtgtttgtttcaaggtttgtaatattattcccgggaatgtgagattgaaaatacaatatttccatgtttttttcaag-ttttgaaaatttgttcccat 22093731  T
Q  116 aaatcttatattttcaagaatgatatttccacatgattt 154  Q
     ||| ||||||| ||| ||||| | |||  |||||||||    
T  22093732 gaatgttatattctcaggaatgttgtttaaacatgattt 22093770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 18833925 - 18833763
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttcc-- 112  Q
    ||||||||||||||||||||||||||||||||   || |||||||||||  |||| ||||||||||||||||||||| || |||||||||||||||||      
T  18833925 ggtgtgtttgtttcaaggtttgtaatatgattatcgggaatgtgaaatttgaaatgcaacattctcatgtttgtttcaag-ttttgaaaatttgttccca 18833827  T
Q  113 ----aataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctca 172  Q
         || ||| |||| |||| |  |||| ||||| ||||||||||||||| ||||||||||||    
T  18833826 tgcatatgaatgttatgttttgagtaatgttatttacacatgatttcttctattgttattctca 18833763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 8262360 - 8262511
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||||||||||||||||||||| | |||||||| |||  |||| |||||||| |||||||||||  || |||| |||||||||||| |    
T  8262360 ggtgtgtttgtttcaaggtttgtaatatgattcccgaaaatgtgagattagaaatgcaacattcacatgtttgttttaag-ttttaaaaatttgttccta 8262458  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttat 167  Q
      ||| |||||||  || ||||| ||| | ||| ||||||||||| |||||||    
T  8262459 ggaatgttatattcccatgaatgttatctacacgtgatttcttctattgttat 8262511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 24888576 - 24888424
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||| | ||||||||||||||||  || |||||||||||| |||| ||  || |||||||||||||  || ||||||||||||||||| |    
T  24888576 ggtgtgtttgtttcgatgtttgtaatatgattctcgggaatgtgaaattggaaatgcagtatactcatgtttgttttaag-ttttgaaaatttgttccga 24888478  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
      ||| ||||||| ||| ||||  ||||| ||||||||||||| ||| ||||||    
T  24888477 ggaatgttatattctcatgaattttatttacacatgatttcttttgtggttatt 24888424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 11385012 - 11384929
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttt 98  Q
    |||| ||||||||||||||||||||||||||||| |||||||||| |||| |||| ||||||||  ||||||||||| ||||||    
T  11385012 ggtgagtttgtttcaaggtttgtaatatgattcccggaaatgtgagattggaaatgcaacattccaatgtttgtttcaagtttt 11384929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 21424270 - 21424319
Alignment:
Q  65 aaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaat 115  Q
    ||||||||||||||||||||||||||  || |||| |||||||||||||||    
T  21424270 aaaatacaacattctcatgtttgttttaag-ttttaaaaatttgttccaat 21424319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 29148 - 28994
Alignment:
Q  14 aggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttcca 113  Q
    ||||||||||||||||||||||||||||||||||  || ||||||| |||| |||| |||||||| |||||||||||| || |||| |||||||||||      
T  29148 aggtgtgtttgtttcaaggtttgtaatatgattctcgggaatgtgacattggaaatgcaacattcccatgtttgtttcaag-ttttaaaaatttgttctc 29050  T
Q  114 ataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattc 169  Q
    || ||| |||| ||  || || || ||||| ||||| ||||||||| |||||||||    
T  29049 atgaatgttatgttcccaggattgttatttgcacataatttcttctattgttattc 28994  T

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Target: scaffold0578 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 2525 - 2685
Alignment:
Q  13 aaggtgtgtttgtttcaaggtttgtaatat--gattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgtt 110  Q
    ||||||||||||||||||| ||||||||||  |||||| |  ||||||| |||| ||||  ||||||  |||||||||||| |||||| |||||||||||    
T  2525 aaggtgtgtttgtttcaagatttgtaatatatgattcccgagaatgtgagattggaaatgtaacatttccatgtttgtttcaagtttt-gaaaatttgtt 2623  T
Q  111 ccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctca 172  Q
    || |  ||| |||||||  || ||||| ||||| |||||||||| |||| ||||||||||||    
T  2624 ccgaggaatgttatattcacaggaatgttatttacacatgatttattctattgttattctca 2685  T

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Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 9015088 - 9015244
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    |||||||||||||||||||||||||||||||||  || ||||||| |||| |||| ||  ||||| ||||||||||  || ||||||||||||||| |      
T  9015088 ggtgtgtttgtttcaaggtttgtaatatgattcatgggaatgtgagattggaaatgcattattctgatgtttgttttaag-ttttgaaaatttgtttcct 9015186  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattctca 172  Q
     |||| |||||||  || ||||| ||||| |||||||||| |||| | ||||||||||    
T  9015187 gaaatgttatattcccatgaatgttatttacacatgattttttctatcgttattctca 9015244  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 12735618 - 12735769
Alignment:
Q  17 tgtgtttgtttcaaggtttgtaatatgattc-caggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaat 115  Q
    ||||||| ||||||| ||||||||||||||  |||||| ||||  |||| |||| ||||||||||||||| ||| | |||||| ||||||||||||| |     
T  12735618 tgtgtttatttcaagatttgtaatatgattttcaggaa-tgtgtgattgtaaatgcaacattctcatgttagttacaagtttt-gaaaatttgttcctac 12735715  T
Q  116 aaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattc 169  Q
    |||| |||||||| ||  |||  ||||| ||||||||||||||| |||||||||    
T  12735716 aaatgttatatttccataaatattatttacacatgatttcttctattgttattc 12735769  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 40210207 - 40210134
Alignment:
Q  13 aaggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgttt 86  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||| |||||||| |||||||    
T  40210207 aaggtgtgtttgtttcaagatttgtaatatgattcccagaaatgtgagattgaaaatccaacattcccatgttt 40210134  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 17889365 - 17889437
Alignment:
Q  96 ttttgaaaatttgttccaataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
    ||||||||||||||||| || ||| ||||||| | | ||||| ||||| |||||| |||||||| ||||||||    
T  17889365 ttttgaaaatttgttcccatgaatattatattatgaggaatgttatttacacatgttttcttctattgttatt 17889437  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 36129883 - 36129808
Alignment:
Q  16 gtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttc 91  Q
    |||||||||||||||| ||| |||||||||| | || ||||||| |||| |||| ||||||||  || ||||||||    
T  36129883 gtgtgtttgtttcaagatttataatatgatttccgggaatgtgagattggaaatgcaacattcctatctttgtttc 36129808  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 8356929 - 8356896
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattcc 48  Q
    ||||||||| ||||||||||||||||||||||||    
T  8356929 ggtgtgtttatttcaaggtttgtaatatgattcc 8356896  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 51255 - 51409
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaata--caacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||| |||||||||||||||||||| |||    || |||| |||  |||||  ||||||||||||||||||||| |||||| |||||||||||||    
T  51255 ggtgtgtttatttcaaggtttgtaatatgactcctacgaacgtgagattagaaatatgcaacattctcatgtttgtttcaagtttt-gaaaatttgttcc 51353  T
Q  113 aataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
     || ||| ||||||| | | ||||| ||||| |||||| |||||||| ||||||||    
T  51354 catgaatattatattatgaggaatgttatttacacatgttttcttctattgttatt 51409  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 27436107 - 27435953
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaata--caacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||| |||||||||||||||||||| |||    || |||| |||  |||||  ||||||||||||||||||||| |||||| |||||||||||||    
T  27436107 ggtgtgtttatttcaaggtttgtaatatgactcctacgaacgtgagattagaaatatgcaacattctcatgtttgtttcaagtttt-gaaaatttgttcc 27436009  T
Q  113 aataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
     || ||| ||||||| | | ||||| ||||| |||||| |||||||| ||||||||    
T  27436008 catgaatattatattatgaggaatgttatttacacatgttttcttctattgttatt 27435953  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 6891076 - 6891227
Alignment:
Q  17 tgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaata 116  Q
    ||||||||||| |||||||||||||||||||| || || || | |||| |||| ||||||||  ||||||||||| || |||||| ||||| |||  | |    
T  6891076 tgtgtttgttttaaggtttgtaatatgattcccgggaacgtaagattggaaatgcaacattcctatgtttgtttcaag-ttttgataatttattcttaga 6891174  T
Q  117 aatcttatattttcaagaatgatatttccacatgatttcttctgttgttattc 169  Q
    ||| |||||||  || ||||| |||||  |||||||||||||| |||||||||    
T  6891175 aatgttatattcccatgaatgttatttatacatgatttcttctattgttattc 6891227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 15879842 - 15879946
Alignment:
Q  53 aatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaataaatcttatattttcaagaatgatatttccacatgat 152  Q
    ||||||| |||  |||| |||||||| |||||||||||| |||||| ||||||||||||| || ||| ||||||| |||| |||| ||||| |||||| |    
T  15879842 aatgtgagattagaaatgcaacattcccatgtttgtttcaagtttt-gaaaatttgttcccatgaatgttatattctcaaaaatgttatttacacatgtt 15879940  T
Q  153 ttcttc 158  Q
    ||||||    
T  15879941 ttcttc 15879946  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 20781509 - 20781663
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaata--caacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||| ||||||||||||||||||||||||  | || |||| |||  |||||  |||||||| || ||||||||| || |||| ||||||||||||    
T  20781509 ggtgtgtttatttcaaggtttgtaatatgattcctaggaacgtgagattagaaatatgcaacattcccacgtttgtttcaag-ttttaaaaatttgttcc 20781607  T
Q  113 aataaatcttatattttcaagaatgatatttccacatgatttcttctgttgttatt 168  Q
     || ||| ||||||| | | ||||| ||||| |||||| |||||||| ||||||||    
T  20781608 catgaatattatattatgaggaatgttatttacacatgttttcttctattgttatt 20781663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 38140870 - 38140716
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttccaa 114  Q
    ||||||||| ||||||| |||||||||||||| | || ||||||  |||| |||| ||| ||| || |||||||||| | |||| |||||||||||| ||    
T  38140870 ggtgtgtttatttcaagatttgtaatatgatttccgggaatgtgtgattggaaatgcaatattttcctgtttgtttcaaatttt-gaaaatttgttctaa 38140772  T
Q  115 taaatcttatattttcaagaatgatatttccacatgatttcttctgttgttattct 170  Q
      ||| ||||||| | | ||||  ||||| ||||||||||||||| ||||||||||    
T  38140771 ggaatgttatattcttatgaatcttatttacacatgatttcttctattgttattct 38140716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 37052336 - 37052241
Alignment:
Q  16 gtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaatttgttcc 112  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| |||| |||| |||||||| | || |||||| ||  |||||||||||||||||    
T  37052336 gtgtgtttgtttcaagggttgtaatatgattcccgggaatgtgagattggaaatgcaacattcccgtgcttgttt-caaattttgaaaatttgttcc 37052241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 48191264 - 48191354
Alignment:
Q  16 gtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttccagtttttgaaaattt 107  Q
    |||||||||||||||||||| |||| ||||| | |||||| ||| ||||  ||| ||||||||||||||||||||| || ||||||||||||    
T  48191264 gtgtgtttgtttcaaggtttataatgtgatttctggaaatttgagattggtaatgcaacattctcatgtttgtttcaag-ttttgaaaattt 48191354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 45916873 - 45916799
Alignment:
Q  16 gtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgttt 90  Q
    |||||||||||||||||||||||||||||||   || ||||||| |||| |||| ||||||||||||||||||||    
T  45916873 gtgtgtttgtttcaaggtttgtaatatgattttcgggaatgtgagattggaaatgcaacattctcatgtttgttt 45916799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 18273222 - 18273146
Alignment:
Q  15 ggtgtgtttgtttcaaggtttgtaatatgattccaggaaatgtgaaattgaaaatacaacattctcatgtttgtttc 91  Q
    ||||||||| |||||||||||||||||||||||   | ||||||| |||  |||| | |||||||||||||||||||    
T  18273222 ggtgtgtttatttcaaggtttgtaatatgattcttaggaatgtgagattagaaatgctacattctcatgtttgtttc 18273146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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