View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3568_high_6 (Length: 341)
Name: NF3568_high_6
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 47991556 - 47991870
Alignment:
| Q |
12 |
atgaaactataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggccaccaatcaagagttgcacaaacaaaa |
111 |
Q |
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| T |
47991556 |
atgaaactataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggccaccaatcaagagttgcacaaacaaaa |
47991655 |
T |
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| Q |
112 |
tcattatcaatccttccaataaaagctttgccatgaattacaacaacccctttcacagctgaatcatttcctaatcctatgcaattcactccaatgaagc |
211 |
Q |
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| T |
47991656 |
tcattatcaatccttccaataaaagctttgccatgaattacaacaacccctttcacagctgaatcatttcctaatcctatgcaattcactccaatgaagc |
47991755 |
T |
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| Q |
212 |
tgaaactgaagcttaccaagtacatccnnnnnnncatacccagaagcnnnnnnngataacacatttcctaaaatcaattaaagttaagatctttatggtt |
311 |
Q |
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| T |
47991756 |
tgaaactgaagcttaccaagtacatccaaaaaaacatacccagaagctttttttgataacccatttcctaaaatcaattaaagttaagatctttatggtt |
47991855 |
T |
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| Q |
312 |
ttttcataaatgggt |
326 |
Q |
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| T |
47991856 |
ttttcataaatgggt |
47991870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 22879619 - 22879730
Alignment:
| Q |
20 |
ataccagattaagaagagaagcatgaccccaactgcatcttccccagtcacatttctgaggaggccaccaatcaagagttgcacaaacaaaatcattatc |
119 |
Q |
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|||||||||| |||||||||||| |||||||||| ||| | || | |||||||||||||||||||||||||| | ||||||||||| |||||||| ||| |
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| T |
22879619 |
ataccagattgagaagagaagcaagaccccaactacatgtaccataatcacatttctgaggaggccaccaatccaaagttgcacaaataaaatcatcatc |
22879718 |
T |
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| Q |
120 |
aatccttccaat |
131 |
Q |
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| T |
22879719 |
aatatttccaat |
22879730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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