View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3568_high_7 (Length: 308)
Name: NF3568_high_7
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 2817760 - 2817492
Alignment:
| Q |
25 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
124 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2817760 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
2817661 |
T |
|
| Q |
125 |
acgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2817660 |
ccgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaacttccacaacgcgaagtcaacaccctt |
2817561 |
T |
|
| Q |
225 |
tcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2817560 |
tcaagccaaagagtttgaagtcaatacgaaggagggaacccaatagttgaagcaatgaactgaacaaca |
2817492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 293
Target Start/End: Complemental strand, 788492 - 788242
Alignment:
| Q |
41 |
ggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaaacgacaatccactcta |
140 |
Q |
| |
|
|||||||||||||| |||||| | ||||||| || ||||||||||| ||||||||||||| |||| ||||||||||| |||||| | |||| |||||||| |
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| T |
788492 |
ggatcacaaaattaaagacgaccacaaaaaatcaaaacccaactct-aaaacatgttgaatgaaa-cattgtagcatgcactaaccaacaacccactcta |
788395 |
T |
|
| Q |
141 |
acaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctttcaagccaaagagctt |
240 |
Q |
| |
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|| |||| ||| ||| | ||||||| ||||||||||||||||||||||||| |||| |||| ||||| |||||| | ||||| | |||||||||| | |
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| T |
788394 |
acgaaaatgacattaacaagaatcaacgaccatcaaacgaactgaaacacaaaaaaacatccataacgctaagtcagcgcccttacgagccaaagagtct |
788295 |
T |
|
| Q |
241 |
gaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
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|||| |||||||||| |||||| |||| ||||||| ||||||| |||| |||| |
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|
| T |
788294 |
gaagccaatacaaagaagggaaaccaacagttgaaacaatgaattgaataaca |
788242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 15032174 - 15032439
Alignment:
| Q |
25 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
124 |
Q |
| |
|
|||||||||| | ||| ||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||| |
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|
| T |
15032174 |
gtgtatgaacgt-ttgcgatcacaaaattaaagacgaccacaaaaaaccaaaacccaactct-aaaacatgttgaatgaaa-cattgtagcatccactaa |
15032270 |
T |
|
| Q |
125 |
acgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctt |
224 |
Q |
| |
|
| |||| |||||||||| |||| ||| ||| | ||||||| ||||||||||||||||||||||||| |||| |||||||||| |||||| | ||||| |
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| T |
15032271 |
ccaacaacccactctaacgaaaatgacattaacaagaatcaacgaccatcaaacgaactgaaacacaaaaaaacatccacaacgctaagtcagcgccctt |
15032370 |
T |
|
| Q |
225 |
tcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
|
|| |||||||||| ||||| |||| |||| ||||| |||| ||||||| ||||||| |||| |||| |
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| T |
15032371 |
tcgagccaaagagtctgaagcaaatatgaaggtgggaaaccaacagttgaaacaatgaattgaataaca |
15032439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 30314822 - 30314557
Alignment:
| Q |
25 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
124 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||| | ||||||| || ||||||||||| ||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
30314822 |
gtgtatgaacgt-ttgggatcacaaaattaaagacgaccacaaaaaatcaaaacccaactct-aaaacatgttgaatgaaa-cattgtagcatgcactaa |
30314726 |
T |
|
| Q |
125 |
acgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctt |
224 |
Q |
| |
|
| |||| |||||||||| |||| ||| ||| | ||||||| | ||||||||||||||||||||||| |||| |||| ||||| |||||| | ||||| |
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|
| T |
30314725 |
ccaacaacccactctaacgaaaatgacattaacaagaatcaacggccatcaaacgaactgaaacacaaaaaaacatccataacgctaagtcagcgccctt |
30314626 |
T |
|
| Q |
225 |
tcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
|
| |||||||||| ||||| |||||| ||| |||||| |||| ||||||| ||||||| |||| |||| |
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| T |
30314625 |
acgagccaaagagtctgaagccaatacgaagaagggaaaccaacagttgaaacaatgaattgaataaca |
30314557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 4052438 - 4052174
Alignment:
| Q |
25 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
124 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
4052438 |
gtgtatgaacgt-ttgggatcacaaaattaaagacgaccacaaaaaaccaaaacccaactct-aaaacatgttgaatgaaa-cattgtagcatgcactaa |
4052342 |
T |
|
| Q |
125 |
acgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctt |
224 |
Q |
| |
|
| |||| |||||||||| |||| ||| ||| | ||||||| ||||||||||| |||||||| ||| |||| |||| ||||| |||||| | ||||| |
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| T |
4052341 |
ccaacaacccactctaacgaaaatgacattaacaagaatcaacgaccatcaaacatactgaaacccaa-aaaaaatccataacgctaagtcagcgccctt |
4052243 |
T |
|
| Q |
225 |
tcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
|
| |||||||||| ||||| |||||| ||| |||||| |||| ||||||| ||||||| |||| |||| |
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|
| T |
4052242 |
acgagccaaagagtctgaagccaatacgaagaagggaaaccaacagttgaaacaatgaattgaataaca |
4052174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 293
Target Start/End: Original strand, 25073438 - 25073703
Alignment:
| Q |
25 |
gtgtatgaacctcttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaa |
124 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||| |||||| |
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|
| T |
25073438 |
gtgtatgaacgt-ttgggatcacaaaattaaagacgaccacaaaaaaccaaaacccaactct-aaaacatgttgaatgaaa-cattgtagcatgcactaa |
25073534 |
T |
|
| Q |
125 |
acgacaatccactctaacaaaaactacagtaaaatgaatcaatgaccatcaaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctt |
224 |
Q |
| |
|
| |||| |||||||||| |||| ||| ||| | ||||||| ||||||||||| |||||||||||| |||| |||| ||||| |||||| | ||||| |
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|
| T |
25073535 |
ccaacaacccactctaacgaaaatgacattaacaagaatcaacgaccatcaaacagactgaaacacaaaaaaacatccataacgctaagtcagcgccctt |
25073634 |
T |
|
| Q |
225 |
tcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttgaagcaatgaactgaacaaca |
293 |
Q |
| |
|
| |||||||||| ||||| |||||||||| |||||| |||| ||||||| ||||||| |||| |||| |
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|
| T |
25073635 |
acgagccaaagagtctgaagccaatacaaagaagggaaaccaacagttgaaacaatgaattgaataaca |
25073703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 12520203 - 12520096
Alignment:
| Q |
38 |
ttgggatcacaaaattatagacgatcccaaaaaaccagaacccaactcttaaaacatgttgaaggaaaacattgtagcatccactaaacgacaatccact |
137 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||||| |||||||||| |||||||||||||| | |||||||||||||| | |||| | |||| ||||| |
|
|
| T |
12520203 |
ttgggatcacaaaattaaagacgaccacaaaaaaccaaaacccaactc-taaaacatgttgaatg-aaacattgtagcatgcgctaaccaacaacccact |
12520106 |
T |
|
| Q |
138 |
ctaacaaaaa |
147 |
Q |
| |
|
||||| |||| |
|
|
| T |
12520105 |
ctaacgaaaa |
12520096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 12520087 - 12519969
Alignment:
| Q |
175 |
aaacgaactgaaacacaacaaaatttccacaacgcgaagtcaacaccctttcaagccaaagagcttgaagtcaatacaaaggagggaacccaatagttga |
274 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| | |||||| | ||||| | |||||||||| ||||| |||||| ||| |||||| |||| |||||| |
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|
| T |
12520087 |
aaacgaactgaaacacaaaaaaacatccataacactaagtcagcgcccttacgagccaaagagtctgaagccaatacgaagaagggaaaccaacagttga |
12519988 |
T |
|
| Q |
275 |
agcaatgaactgaacaaca |
293 |
Q |
| |
|
| ||||||| |||| |||| |
|
|
| T |
12519987 |
aacaatgaattgaataaca |
12519969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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