View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3568_high_8 (Length: 252)
Name: NF3568_high_8
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_high_8 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
| [»] scaffold1033 (1 HSPs) |
| | |
|
| [»] scaffold1029 (1 HSPs) |
| | |
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| [»] scaffold1126 (1 HSPs) |
| | |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: scaffold0927 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 362 - 598
Alignment:
| Q |
1 |
tgaacatcagggtatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
362 |
tgaacatcaggatatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattatggtcgcaaat |
461 |
T |
|
| Q |
101 |
cagttttcatcatcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
462 |
cagttttcatcatcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatg |
561 |
T |
|
| Q |
201 |
aacatgtcaagtcattgattaatgttagtgttgggtg |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
562 |
aacatgtcaagtcattgattaatgttagtgttgggtg |
598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 28584554 - 28584329
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28584554 |
tatttccagtgaagacgtgcaaggacatgttgctcacatgatttcaaatgaatggaaatttctcaatcaagaaattctggttgcaaatcagttttcatca |
28584455 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
28584454 |
tcattttccaacttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaaaccaagcctctctaatctccaggaacatgtcaagt |
28584355 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgggtgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28584354 |
cattgattaatgttagtgttgggtgt |
28584329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 28566579 - 28566355
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28566579 |
tatttccagtgaagacgtgcaacgacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaatcagttttcatca |
28566480 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || | |
|
|
| T |
28566479 |
tcattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaacccgagcctctctaatctccaggaacatgttaact |
28566380 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgggtg |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28566379 |
cattgattaatgttagtgttgggtg |
28566355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 28573324 - 28573099
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28573324 |
tatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaatcagttttcatcg |
28573225 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
28573224 |
tcattttccaacttttgtctcaatgctgcaagaatggttcccctcatgtaccactataagagcaacccaagcctctctaatctccaggaacatgtcaagt |
28573125 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgggtgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28573124 |
cattgattaatgttagtgttgggtgt |
28573099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 26314471 - 26314247
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26314471 |
tatttccggtgaagacgtgcaaagacatgttgctcacatgatttcaaatgaatggaaacgtctcaatcaagaaattctggttgcaaatcaattttcatca |
26314372 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
26314371 |
tcattttccaatttttgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagt |
26314272 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgggtg |
237 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
26314271 |
cattgattaatgctagtggtgggtg |
26314247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 20615236 - 20615035
Alignment:
| Q |
21 |
gtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatcatcattttc |
120 |
Q |
| |
|
||||||| ||||||| |||||||||| | ||||||| |||||||||||||||||| |||||||||||| || | || || ||| ||||||||||| | |
|
|
| T |
20615236 |
gtgaagatgtgcaaagacatgttgctgagatgattttaaatgaatggaaatgtctaaatcaagaaattttgaacccatatgtatttccatcatcatttac |
20615137 |
T |
|
| Q |
121 |
caatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgatt |
220 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
20615136 |
caatttttgccttaatgctgctagaatggttcctctcatgtaccattataagagcaacccaagcctctctagtctaaaggaacatgtcaagtcattgatt |
20615037 |
T |
|
| Q |
221 |
aa |
222 |
Q |
| |
|
|| |
|
|
| T |
20615036 |
aa |
20615035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 24070016 - 24069795
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
||||||| | ||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
24070016 |
tatttccggcgaagaggtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcacaaataagttttcatca |
24069917 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
24069916 |
tcattttccaatttttgtctcaatgctgcaagaatggttctcctcatgtaccactataagagcaactcaagcctctctaatctccaggaacatgtcaagt |
24069817 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgg |
234 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
24069816 |
cattgattaatgttggtgttgg |
24069795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 24080720 - 24080941
Alignment:
| Q |
13 |
tatttccagtgaagacgtgcaaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatcagttttcatca |
112 |
Q |
| |
|
||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24080720 |
tatttccggggaagacgtgcaaagacatgttgctcgcatgatttcaaatgaatggaaatgtctcaatcaagaaattctggttgcaaataagttttcatca |
24080819 |
T |
|
| Q |
113 |
tcattttccaatttttgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagt |
212 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||| |
|
|
| T |
24080820 |
tcattttccaatttttgtatcaatgctgcaagaatggttcccctcatgtaccactataagagcaaccctagcctatctaatctctaggaacatgtcaagt |
24080919 |
T |
|
| Q |
213 |
cattgattaatgttagtgttgg |
234 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
24080920 |
tattgattaatgttggtgttgg |
24080941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
128 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
228 |
gtgttgg |
234 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 1 - 107
Alignment:
| Q |
128 |
tgtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
227 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1 |
tgtctcaatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgttg |
100 |
T |
|
| Q |
228 |
gtgttgg |
234 |
Q |
| |
|
||||||| |
|
|
| T |
101 |
gtgttgg |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1126 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1126
Description:
Target: scaffold1126; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 2718 - 2615
Alignment:
| Q |
134 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgttagtgttg |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
2718 |
aatgctgctagaatggttcccctcatgtaccactataagagcaatccaagcctctctaatctccaggaacatgtcaagtcattgattaatgctagtggtg |
2619 |
T |
|
| Q |
234 |
ggtg |
237 |
Q |
| |
|
|||| |
|
|
| T |
2618 |
ggtg |
2615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 227
Target Start/End: Original strand, 2603159 - 2603357
Alignment:
| Q |
32 |
caaacacatgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaattctggtcgcaaatc---agttttcatcatcattttccaattttt |
128 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| | | | |||| ||||| ||||||||| |||| |||| |
|
|
| T |
2603159 |
caaagacatgttgctaacatgatttcaaatgaatggaaacgtctcaatcaagaaatcataaccccgaatccaattttttcgtcatcatttaccaaatttt |
2603258 |
T |
|
| Q |
129 |
gtctgaatgctgctagaatggttcccctcatgtaccactataagagcaatccgagcctctctaatctccatgaacatgtcaagtcattgattaatgtta |
227 |
Q |
| |
|
| || |||| ||| ||||||||||| |||||||| ||||| |||| ||||| || || || ||||| || || | ||||||||||||| ||||||||| |
|
|
| T |
2603259 |
gccttaatgttgcaagaatggttcctctcatgtatcactaccagagtaatccaagtctttccaatctacaagaccttgtcaagtcattggttaatgtta |
2603357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 2600015 - 2600064
Alignment:
| Q |
38 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaaat |
87 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2600015 |
catgttgctaacatgatttcaaatgaatggaaacgtctcaaacaagaaat |
2600064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 2591881 - 2591928
Alignment:
| Q |
38 |
catgttgctcacatgatttcaaatgaatggaaatgtctcaatcaagaa |
85 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
2591881 |
catgttgctcatatgatttcaaatgaatggaaacgtctgaatcaagaa |
2591928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 4 - 56
Alignment:
| Q |
182 |
agcctctctaatctccatgaacatgtcaagtcattgattaatgttagtgttgg |
234 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4 |
agcctctctaatctccaggaacatgtcaagtcattgattaacgttggtgttgg |
56 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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