View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3568_low_13 (Length: 234)
Name: NF3568_low_13
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 52236751 - 52236980
Alignment:
| Q |
3 |
tataatcttcctctcatttatgtatgtgcatgttctatcatatgtgacatctgagttggtaatctacatcagcattttatgtcacgcgccaacgtttaac |
102 |
Q |
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| T |
52236751 |
tataatcttcctctcgtttatgtatgtgcatattctatcatatgtgacatctgagttggtaatctacatgagcattttatgtcacgcgccagcgtttaac |
52236850 |
T |
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| Q |
103 |
atcacacgtcattcccattaaatgtaagaattaatggaggaatgaaatagatcaacatttataaattcaaagtcgtcttagctattttnnnnnnnnttta |
202 |
Q |
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| T |
52236851 |
atcacacgtcattcccattaaatgtaagacttaatggaggaatgaaattgatcaacatttataaattcaaagtcgtcttagctatttt--aaaaaattta |
52236948 |
T |
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| Q |
203 |
aggatgaaattgatcgtaaattcaagcatatt |
234 |
Q |
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| T |
52236949 |
aggatgaaattgatcgtaaattcaagcatatt |
52236980 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 37749280 - 37749243
Alignment:
| Q |
5 |
taatcttcctctcatttatgtatgtgcatgttctatca |
42 |
Q |
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| T |
37749280 |
taatctttctctcaattatgtatgtgcatgttctatca |
37749243 |
T |
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