View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3568_low_15 (Length: 202)
Name: NF3568_low_15
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 6235188 - 6235026
Alignment:
| Q |
16 |
aagaaaatgaagggacacgacatgaatctgcaagcgtacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgatat |
115 |
Q |
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| T |
6235188 |
aagaatatgaagggacacgacacgaatccgcaagcgtacggttcttatcgagtagtaaaacatttatcgtccacaaagagttatatgtaattaccgatat |
6235089 |
T |
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| Q |
116 |
tgtttctagtgttgatagctgaaatgattaaagtttaagagttatatgtaatcaagatcttgttcacttt |
185 |
Q |
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| T |
6235088 |
tgtttct-------atagctgaaatgattaaagtttaagagttatatgtaatcaagatattgttcacttt |
6235026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 1423549 - 1423614
Alignment:
| Q |
45 |
gcaagcgtacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgat |
113 |
Q |
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| T |
1423549 |
gcaagcgtacggttcttatcgagtattaaaa---atatcgcccataaggagctatatgtaattaccgat |
1423614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 6531994 - 6531918
Alignment:
| Q |
34 |
gacatgaatctgcaagcgtacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgat |
113 |
Q |
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| T |
6531994 |
gacacgaatccgcaagcgtacggttcttatcgagtagtaaaa---atatcgtccacaaggagttgtatgtaattaccgat |
6531918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 11267951 - 11267992
Alignment:
| Q |
79 |
ttatcgtccacaaagagttatatgtaattaccgatattgttt |
120 |
Q |
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| T |
11267951 |
ttatcgtccacaaagagttatatgtaattatcgattttgttt |
11267992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 21511293 - 21511373
Alignment:
| Q |
39 |
gaatctgcaagcgtacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgatattgttt |
120 |
Q |
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| T |
21511293 |
gaatctgcaagcgtacgggtcttatcgagtagtaaaaagattatcgtccacatagagtta-aagtaattaccgatcttgttt |
21511373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 21515707 - 21515743
Alignment:
| Q |
39 |
gaatctgcaagcgtacggttcttatcgagtagtaaaa |
75 |
Q |
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| T |
21515707 |
gaatccgcaagcgtacggttcttatcgagtagtaaaa |
21515743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 26492644 - 26492720
Alignment:
| Q |
34 |
gacatgaatctgcaagcgtacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgat |
113 |
Q |
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| T |
26492644 |
gacacgaatccgcaagcgtacggttcttatcaagtagtaaaa---atattgtccacagagagttatatgtaattaccgat |
26492720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 17295074 - 17295109
Alignment:
| Q |
40 |
aatctgcaagcgtacggttcttatcgagtagtaaaa |
75 |
Q |
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| T |
17295074 |
aatccgcaagcgtacggttcttatcgagtagtaaaa |
17295109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 17465622 - 17465520
Alignment:
| Q |
52 |
tacggttcttatcgagtagtaaaagatttatcgtccacaaagagttatatgtaattaccgatattgtttctagtgttga-tagctgaaatgattaaagtt |
150 |
Q |
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||||||||| |||||||||||||| ||||||| |||| ||||||| | |||||||||||| |||||| |||| ||| ||||||||| |||||| | | |
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| T |
17465622 |
tacggttct-atcgagtagtaaaaagattatcgttcacagagagtta-aagtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggat |
17465525 |
T |
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| Q |
151 |
taaga |
155 |
Q |
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||||| |
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| T |
17465524 |
taaga |
17465520 |
T |
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