View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3568_low_2 (Length: 445)

Name: NF3568_low_2
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3568_low_2
NF3568_low_2
[»] chr6 (10 HSPs)
chr6 (85-234)||(24950279-24950428)
chr6 (325-388)||(24950149-24950212)
chr6 (169-228)||(6921506-6921565)
chr6 (172-226)||(6943112-6943166)
chr6 (172-228)||(6935374-6935430)
chr6 (160-224)||(6954679-6954743)
chr6 (170-228)||(6948036-6948094)
chr6 (325-387)||(14749399-14749461)
chr6 (76-118)||(24955807-24955849)
chr6 (169-226)||(20770505-20770562)
[»] chr7 (18 HSPs)
chr7 (1-52)||(24383802-24383853)
chr7 (161-288)||(24391252-24391379)
chr7 (169-226)||(14076550-14076607)
chr7 (169-226)||(14386578-14386635)
chr7 (164-240)||(24385042-24385118)
chr7 (169-228)||(13417079-13417138)
chr7 (325-387)||(660853-660915)
chr7 (325-387)||(29454109-29454171)
chr7 (330-387)||(24385208-24385265)
chr7 (2-47)||(24391081-24391126)
chr7 (329-384)||(20414888-20414943)
chr7 (178-228)||(1986111-1986161)
chr7 (325-387)||(19344581-19344643)
chr7 (325-386)||(19722020-19722081)
chr7 (2-47)||(24384862-24384907)
chr7 (1-37)||(20456192-20456228)
chr7 (1-37)||(21210758-21210794)
chr7 (325-377)||(29899376-29899428)
[»] chr2 (7 HSPs)
chr2 (325-387)||(18908815-18908877)
chr2 (325-387)||(18913563-18913625)
chr2 (325-387)||(18920771-18920833)
chr2 (169-226)||(20712691-20712748)
chr2 (160-216)||(20967546-20967602)
chr2 (325-375)||(10205462-10205512)
chr2 (326-387)||(14514903-14514964)
[»] scaffold0097 (1 HSPs)
scaffold0097 (169-226)||(16530-16587)
[»] chr4 (5 HSPs)
chr4 (325-387)||(53774842-53774904)
chr4 (325-387)||(35767020-35767082)
chr4 (325-387)||(837778-837840)
chr4 (329-387)||(3565750-3565808)
chr4 (196-232)||(10467925-10467961)
[»] chr1 (3 HSPs)
chr1 (326-384)||(4014974-4015032)
chr1 (325-387)||(4570929-4570991)
chr1 (329-386)||(39379068-39379125)
[»] chr5 (1 HSPs)
chr5 (325-386)||(28763912-28763973)
[»] chr3 (1 HSPs)
chr3 (329-387)||(3625740-3625798)


Alignment Details
Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 85 - 234
Target Start/End: Complemental strand, 24950428 - 24950279
Alignment:
Q  85 tgtgtttatttgagcggaactcttaactggttggtcattcgaaaggatattacatatgattggaataactataccgttgagaattttgtgatcatctcgc 184  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||| ||||||||| |    
T  24950428 tgtgtgtatttgagcggaactcttaattggttggtcattcgaaatgatattacatatgattggaataatcatactgttgagaattttgcgatcatctcac 24950329  T
Q  185 ttgatttggggactgagacatacacacaattgttgctccctcgaggttct 234  Q
    |||||| | |||| |||||||||| ||||||||||| |||||||||||||    
T  24950328 ttgattcgaggacagagacatacagacaattgttgccccctcgaggttct 24950279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 24950212 - 24950149
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaattg 388  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  24950212 tttgttatatggaagatgatgaagtttggagttgaggagtcttggagtcaattccttaaaattg 24950149  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 6921565 - 6921506
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcga 228  Q
    |||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  6921565 tttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcga 6921506  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 6943166 - 6943112
Alignment:
Q  172 gtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    ||||| ||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  6943166 gtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctc 6943112  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 6935430 - 6935374
Alignment:
Q  172 gtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcga 228  Q
    ||||| ||||| |||||||||||||| |||||||  ||| |||||||||||||||||    
T  6935430 gtgatgatctcacttgatttggggacagagacatgtacaaaattgttgctccctcga 6935374  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 6954743 - 6954679
Alignment:
Q  160 gttgagaattttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccc 224  Q
    ||||| || |||||||||||||| |||||| || |||| |||||||| ||||| |||||||||||    
T  6954743 gttgaaaaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctccc 6954679  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 6948094 - 6948036
Alignment:
Q  170 ttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcga 228  Q
    ||||||| ||||| |||||||||||||| |||| ||| ||||  |||||||||||||||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcga 6948036  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 14749399 - 14749461
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||| |||||| ||||||| | ||||| ||| |||||||||||| ||||||||| ||||||    
T  14749399 tttgttttatggaggatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 14749461  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 24955849 - 24955807
Alignment:
Q  76 tgctacggttgtgtttatttgagcggaactcttaactggttgg 118  Q
    |||||| ||||||| |||||||||||| |||||||||||||||    
T  24955849 tgctacagttgtgtgtatttgagcggatctcttaactggttgg 24955807  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 20770505 - 20770562
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    |||||||||||||| |||||||||| ||  |||||||||| ||| ||||| |||||||    
T  20770505 tttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctc 20770562  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24383802 - 24383853
Alignment:
Q  1 atttttagtttgggtgataatatttggaaaagtattccaagttttccagata 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24383802 atttttagtttgggtgataatatttggaaaagtattccaagttttccagata 24383853  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 24391252 - 24391379
Alignment:
Q  161 ttgagaattttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcgaggttctggtgaaaagttcttaactgacccaag 260  Q
    ||||| ||| || ||||||||| |||||||||||||  |||||||||||||||||||||| |||| ||| |||  |||||  ||| || | |||  |||     
T  24391252 ttgagcattatgcgatcatctcacttgatttggggatagagacatacacacaattgttgccccctagagattcccgtgaagtgttgttgaatgagtcaac 24391351  T
Q  261 catttgtgtgttcatggattgtctttgt 288  Q
    |||||||||| |||||||||| ||||||    
T  24391352 catttgtgtgctcatggattgcctttgt 24391379  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 14076550 - 14076607
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  14076550 tttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctc 14076607  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 14386578 - 14386635
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||    
T  14386578 tttgtgattatctcacttgatttggggactgagacatatacacaattgttactccctc 14386635  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 24385042 - 24385118
Alignment:
Q  164 agaattttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcgaggttctggtgaa 240  Q
    |||||| | |||||||||| ||| |||||||||| |||| ||||||||||||||||| ||||| |||||||| ||||    
T  24385042 agaattatatgatcatctcacttaatttggggacagagaaatacacacaattgttgccccctcaaggttctgatgaa 24385118  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 13417138 - 13417079
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctcga 228  Q
    |||||||| |||||| |||| ||||||||||||||||| ||||| |||||||| ||||||    
T  13417138 tttgtgattatctcggttgagttggggactgagacatatacacagttgttgctacctcga 13417079  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 660915 - 660853
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||| |||||| | | ||| | |||||||||||||||| ||||||||||||||||    
T  660915 tttgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaatt 660853  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 29454171 - 29454109
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    ||||||||||||  ||||||||| ||||| |||||||| ||||||| ||||||| ||||||||    
T  29454171 tttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaatt 29454109  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 24385208 - 24385265
Alignment:
Q  330 tatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||||| ||| ||||| |||||| |||||||||||| ||| |||||||||    
T  24385208 tatatggaagatgaagaactttggagttgaaaagtcttggagtcgatttcttaaaatt 24385265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24391081 - 24391126
Alignment:
Q  2 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 47  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||    
T  24391081 tttttagtttgggtgataatatttggagaaatattcaaagttttcc 24391126  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 20414888 - 20414943
Alignment:
Q  329 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaa 384  Q
    ||||||||||||||||||| ||||| | |||  ||||||||| |||||||||||||    
T  20414888 ttatatggaagatgatgaaatttggagatgacaagtcttggactcaattccttaaa 20414943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 1986161 - 1986111
Alignment:
Q  178 atctcgcttgatttggggactgagacatacacacaattgttgctccctcga 228  Q
    ||||| |||||||||||||| |||| ||| ||||| |||||||||||||||    
T  1986161 atctcacttgatttggggacagagagatatacacagttgttgctccctcga 1986111  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 19344643 - 19344581
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||| |||||||| | ||||| |||||| | ||||||| |||||| |||||||||    
T  19344643 tttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttcttaaaatt 19344581  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 19722020 - 19722081
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaat 386  Q
    |||||| |||||||||||||| | ||||| ||| |||| ||||||| ||||||||| |||||    
T  19722020 tttgttttatggaagatgatggaatttggagttcaagattcttggactcaattcctcaaaat 19722081  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24384862 - 24384907
Alignment:
Q  2 tttttagtttgggtgataatatttggaaaagtattccaagttttcc 47  Q
    ||||||||||||| ||| ||||||||| |||||||| |||||||||    
T  24384862 tttttagtttgggagatgatatttggagaagtattcaaagttttcc 24384907  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20456192 - 20456228
Alignment:
Q  1 atttttagtttgggtgataatatttggaaaagtattc 37  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  20456192 atttttagtttgggtgataatgtttggagaagtattc 20456228  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21210794 - 21210758
Alignment:
Q  1 atttttagtttgggtgataatatttggaaaagtattc 37  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  21210794 atttttagtttaggtgataatatttggaaaactattc 21210758  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 29899376 - 29899428
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaatt 377  Q
    |||||||||||| |||||| ||| ||||| ||||||||||| |||| ||||||    
T  29899376 tttgttatatggcagatgaagaaatttggggttgaagagtcctggactcaatt 29899428  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 18908877 - 18908815
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| ||||||    
T  18908877 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 18908815  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 18913625 - 18913563
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| ||||||    
T  18913625 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 18913563  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 18920833 - 18920771
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||| ||||||||| ||||||    
T  18920833 tttgttatatggaagatgatggaatttggagttcaagagtcttggactcaattcctcaaaatt 18920771  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 20712748 - 20712691
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    |||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||    
T  20712748 tttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc 20712691  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 20967546 - 20967602
Alignment:
Q  160 gttgagaattttgtgatcatctcgcttgatttggggactgagacatacacacaattg 216  Q
    |||||| | ||||||||||| || |||||||||||||| ||||| ||||||||||||    
T  20967546 gttgagcaatttgtgatcatttcccttgatttggggacagagacctacacacaattg 20967602  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 10205512 - 10205462
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaa 375  Q
    |||||||||||||||||||   ||| |||||||||||||||||||| ||||    
T  10205512 tttgttatatggaagatgactgagtatggtgttgaagagtcttggactcaa 10205462  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 14514903 - 14514964
Alignment:
Q  326 ttgttatatggaagatg-atgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    ||||||||||||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||||||    
T  14514903 ttgttatatggaaaatggatgaa-tttggagttgaagattcttggactcaattccttaaaatt 14514964  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 16587 - 16530
Alignment:
Q  169 tttgtgatcatctcgcttgatttggggactgagacatacacacaattgttgctccctc 226  Q
    |||||||||||||| || ||||||||||  ||||||||||||||| ||||||||||||    
T  16587 tttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctc 16530  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 53774842 - 53774904
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||| | |||| | | ||||| |||||||||||||||| ||||||||||||||||    
T  53774842 tttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaatt 53774904  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 35767020 - 35767082
Alignment:
Q  325 tttgttatatggaagatg-atgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||||| |||| |||||||||||    
T  35767020 tttgttatatggaagatggaagaa-tttggagttgaagagtcttggattcaactccttaaaatt 35767082  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 837778 - 837840
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||| | |||| ||| ||||||||| |||||||||||| ||||||  ||||||||    
T  837778 tttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaatt 837840  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 3565750 - 3565808
Alignment:
Q  329 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||| |||||| | | ||||| |||||||||||||||| |||||| |||||||||    
T  3565750 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaatt 3565808  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 10467925 - 10467961
Alignment:
Q  196 actgagacatacacacaattgttgctccctcgaggtt 232  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  10467925 actgagacatacactcaattgttgctacctcgaggtt 10467961  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 4015032 - 4014974
Alignment:
Q  326 ttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaa 384  Q
    ||||||||||| |||||| ||| ||||| |||||||| ||||||| |||||||||||||    
T  4015032 ttgttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaa 4014974  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 4570929 - 4570991
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||||||| | |||| ||| ||||| |||||||| ||||||| |||||| |||||||||    
T  4570929 tttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaatt 4570991  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 39379125 - 39379068
Alignment:
Q  329 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaat 386  Q
    |||||||| |||||| | | ||||| |||||||||||||||| |||||| ||||||||    
T  39379125 ttatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaat 39379068  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 28763973 - 28763912
Alignment:
Q  325 tttgttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaat 386  Q
    ||||||||||||||||||| | | ||||| |||||| |||||||||||| |||||| |||||    
T  28763973 tttgttatatggaagatgacgcaatttggagttgaaaagtcttggagtcgattcctcaaaat 28763912  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 3625740 - 3625798
Alignment:
Q  329 ttatatggaagatgatgaagtttggtgttgaagagtcttggagtcaattccttaaaatt 387  Q
    |||||||| | |||| ||| ||||| |||||||||||||||| |||||| |||||||||    
T  3625740 ttatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaatt 3625798  T

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