View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3568_low_4 (Length: 389)
Name: NF3568_low_4
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 379
Target Start/End: Complemental strand, 13303279 - 13302919
Alignment:
| Q |
20 |
tcccatgtgtgatttttt-ctataaatacagagaaaaaacttcacttgccaagaggagttgtgagcctcgtggaccgccccgtataaggatgacatcgga |
118 |
Q |
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| T |
13303279 |
tcccatgtgtgatttttttctataaatatagagaaaaaacttcatttgccaagaggagtagtgagcctcgtggaccgccccgtataaggatgacatcgga |
13303180 |
T |
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| Q |
119 |
acacgtatgagagggggtcaaagatttctcaaaggtacaagttgtatctcatgttgttttgaaaccataaggttatggatggtcacacaattggataaaa |
218 |
Q |
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| T |
13303179 |
acaggtatgagagggggtcaaagatttctcaaaggtacaagttgtatctcgtgttgttttgaaaccataaggttatggatggtcacacaattggataaaa |
13303080 |
T |
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| Q |
219 |
atattattttttgggatttggcttattagaaagataacctcttgaggcacaatctcgatgttatgtacattgagaaaagtgtctttgataccatacttaa |
318 |
Q |
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| T |
13303079 |
aaaatattttttgggatttggcttattagaaagataacctcttgaggtacaatctcgatgttatgcacattgagaaaagtgtctttgataccatatttaa |
13302980 |
T |
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| Q |
319 |
cacaatgttgaatgttaaaggtaaaagaagtcattctagatatgttgattgatcgatctct |
379 |
Q |
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| T |
13302979 |
cacgatgatgaatgttaaaggtaaaagaagtcattctagatatgttgattaatctatctct |
13302919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 13300408 - 13300371
Alignment:
| Q |
331 |
tgttaaaggtaaaagaagtcattctagatatgttgatt |
368 |
Q |
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| T |
13300408 |
tgttaaaggtaaaagaagtcattctagatatgttgatt |
13300371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 294
Target Start/End: Complemental strand, 1935222 - 1935151
Alignment:
| Q |
223 |
tattttttgggatttggcttattagaaagataacctcttgaggcacaatctcgatgttatgtacattgagaa |
294 |
Q |
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| T |
1935222 |
tattttttgggatttgctatattggaaagataatctattaaggcacaatctcgatgtcatgcatattgagaa |
1935151 |
T |
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