View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3568_low_5 (Length: 376)
Name: NF3568_low_5
Description: NF3568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3568_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 358
Target Start/End: Original strand, 43463603 - 43463953
Alignment:
| Q |
8 |
gagcagagattctttgcttagggtccctctccaacatcttttttaccaaatctttagcactttctgagatcgttggccatggttccgattcaaaatcaag |
107 |
Q |
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| T |
43463603 |
gagcagagattctttgcttagggtccctctccaacatcttttttaccaaatctttagcactttctgagatcgttggccatggttccgattcaaaatcaag |
43463702 |
T |
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| Q |
108 |
atctccatgtaaaatctgtctaaaaattcccgattcggtttctggaggttatagaaaaagtgattgtagctcaggcataaaaaatatattaagtagatca |
207 |
Q |
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| T |
43463703 |
atctccatgtaaaatctgtctaaaaattcccgattcggtttctggaggttatagaaaaagtgattgtagctcaggcataaaaaatatattaagtagatca |
43463802 |
T |
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| Q |
208 |
ctaaataatatactgacaagaaatgcataacagacacaaaaatccaagataattacaacagaaactacaatggttaccagcccaaaaaggtggaacaccg |
307 |
Q |
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| T |
43463803 |
ctaaataatatactgacaagaaatgcataacagacacacaaatccaagataattacaacagaaactacaatggttaccagcccaaaaaggtggaacaccg |
43463902 |
T |
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| Q |
308 |
ctcaataagatgtataagatcacaccagcactccagacatcaacttgcggt |
358 |
Q |
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| T |
43463903 |
ctcaataagatgtataagatcacaccagcactccagacatcaacttgcggt |
43463953 |
T |
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