View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3569_high_1 (Length: 543)
Name: NF3569_high_1
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3569_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 42472999 - 42472702
Alignment:
| Q |
12 |
atgaaatatagaatacaatgagaagatttgaaggcagtaaatatgaagatgggtaaacgnnnnnnnggtaacatttgaaaattgatgggaagcttctttc |
111 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
42472999 |
atgaaatataaaatacaatgagaagagttgaaggcagtaaatatgaagatgggtaaacgaaaaaaaggtagcatttgaaaattgatgggaagcttctttc |
42472900 |
T |
|
| Q |
112 |
aaaatggaaattgatgagaactaattgatacttgatcttctttattggaaagagaaaaatatagttcatgaacnnnnnnnntttaaggccttttctcttt |
211 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42472899 |
aaaatggaaattgatgagaactaatcgagacttgatcttctttattggaaagagaaaaatatagttcatgaacaaaaaaaatttaaggccttttctcttt |
42472800 |
T |
|
| Q |
212 |
tgttaaaaatannnnnnngtgaggtctaaaagtctttgtttggttgctcgacccttgtgccgaccggccctatgggcac--atgtgtgtaaccaaccaa |
308 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42472799 |
tgttaaaaatatttttttgtgaggtct-aaagtctttgtttggttgctcgacccttgtgccgaccggccctatgggcacatatgtgtgtaaccaaccaa |
42472702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 409 - 527
Target Start/End: Complemental strand, 42472098 - 42471980
Alignment:
| Q |
409 |
tgcaaatttttgaccaacaaagctaattttgagatagcaaatagcatgatacatcctaattacgttatctgcctcaacaaaactacatgcacataaatca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42472098 |
tgcaaatttttgaccaacaaagctaattttgagatagcaaatagcatgacacatcctaattacgttatctgcctcaacaaaactacatgcacataaatca |
42471999 |
T |
|
| Q |
509 |
cacgttctaacttattaat |
527 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42471998 |
cacgttctaacttattaat |
42471980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 42472135 - 42472095
Alignment:
| Q |
318 |
ttgtttatgttatctggctcagttagtatctctcttctgca |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42472135 |
ttgtttatgttatctggctcagttagtatctctcttctgca |
42472095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University