View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3569_high_10 (Length: 203)
Name: NF3569_high_10
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3569_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 4985628 - 4985453
Alignment:
| Q |
14 |
aatataaaatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctccaatctaacaatcccattttgc |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4985628 |
aatataaaatgaagatgtaacttcaaaaatttctatatctatactgagttgttcaactatccttgtctcaattccctccaatctaacaatcccattttgc |
4985529 |
T |
|
| Q |
114 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacagttgaaggcggtctatttg |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
4985528 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacatttgaaggtggtctttttg |
4985453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 4983239 - 4983064
Alignment:
| Q |
14 |
aatataaaatgaaaatgtaacttcaaaaatttctatatctatactgagttgttcatctatccttgtctcaattccctccaatctaacaatcccattttgc |
113 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||| || ||||||||||| || | |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4983239 |
aatataaaatgaagatgcaacttcaaaaatttctgtatcaatggtgagttgttcacttactcctgtctcaaatccctccactctaacaatcccattttgc |
4983140 |
T |
|
| Q |
114 |
ttcataaccttaaatctaccatctatttgtgctatttcttcaagttttgacacaacagttgaaggcggtctatttg |
189 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||||| | ||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
4983139 |
ttcatcaccttaaatctaccaactaattgtgctgtctcttcaagttttgacacaattgttgaaggtggtctatttg |
4983064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University