View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3569_high_8 (Length: 236)
Name: NF3569_high_8
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3569_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 33387149 - 33386960
Alignment:
| Q |
1 |
attaaaatctttgtattatggttgaactcttgtattttaactcattaacttttttaacttctaccagnnnnnnnncttctaccagttgagctactcaatc |
100 |
Q |
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| T |
33387149 |
attaaaatctttgtattatggttgaattcttgtattttaactcattaacttttttaacttctacca------------------gttgagctactcaatc |
33387068 |
T |
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| Q |
101 |
ttataatactaaggttttgtcaaaaataaataaattaaggtatggtactaagagcataattatcggtgcaaaagcacaatggtatatctgagccaaatga |
200 |
Q |
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| T |
33387067 |
ttataatactaaggttttgacaaaaataaattaattaaggtatggtactaagagcataattatcagtgcaaaagcacaatggtataactgagccacatga |
33386968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 11425849 - 11425787
Alignment:
| Q |
146 |
tactaagagcataattatcggtgcaaaagcacaatggtatatctgagccaaatgaaaatgtgt |
208 |
Q |
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| T |
11425849 |
tactaagagcataattatcggtgcaaaagcaccgtggtataacttagccaaatgaaaatgtgt |
11425787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 44396122 - 44396184
Alignment:
| Q |
146 |
tactaagagcataattatcggtgcaaaagcacaatggtatatctgagccaaatgaaaatgtgt |
208 |
Q |
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| T |
44396122 |
tactaagagcataattatcggtgcaaaaacactgtggtataacttggccaaatgaaaatgtgt |
44396184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 34383509 - 34383566
Alignment:
| Q |
151 |
agagcataattatcggtgcaaaagcacaatggtatatctgagccaaatgaaaatgtgt |
208 |
Q |
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|||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34383509 |
agagtataattatcagtgcaaaagcaccgtggtataactgagccaaatgaaaatgtgt |
34383566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 5415537 - 5415478
Alignment:
| Q |
149 |
taagagcataattatcggtgcaaaagcacaatggtatatctgagccaaatgaaaatgtgt |
208 |
Q |
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||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| |
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| T |
5415537 |
taagagcataattatcggtgcaaaaataccgtggtataacttggccaaatgaaaatgtgt |
5415478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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