View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3569_high_9 (Length: 229)
Name: NF3569_high_9
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3569_high_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 33387496 - 33387268
Alignment:
| Q |
1 |
aaaattatgataagaatagaggacaaaaacttagggattctaagaaattgccacctttgatgaactatgatggaattggaaagcatggttatgagttaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387496 |
aaaattatgataagaatagaggacaaaaacttagggattctaagaaattgccacctttgatgaactatgatggaattggaaagcatggttatgagttaag |
33387397 |
T |
|
| Q |
101 |
aagaagttgcaatgaatgtgccatttgtttggaagattttcaaaggggacaattgtgtcaagtttttcctgtttgcaagcacatttttcattcagattgt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387396 |
aagaagttgcaatgaatgcgccatttgtttggaagattttcaaaggggacagttgtgtcaagtttttcctgtttgcaagcacatttttcattcagattgt |
33387297 |
T |
|
| Q |
201 |
atagatcattggttgcagaggaacttaac |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
33387296 |
atagatcattggttgcagaggaaattaac |
33387268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University