View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3569_low_4 (Length: 401)
Name: NF3569_low_4
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3569_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 18321351 - 18321718
Alignment:
| Q |
18 |
aatatctcttccacttttgaggtcaacattagtgccatttagactctgaaaagcaactggatttgtgatgcttgttgtgactatgcctatgtggtttcca |
117 |
Q |
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| T |
18321351 |
aatatcacttccacttttgaggtcaacattagtgccatttagactctgaaaagcaactggatttgtgatgcttgttgtgactatgcctatgtggtttcca |
18321450 |
T |
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| Q |
118 |
tctggatcaaattcgttcatgaacgtgtctaactccacaccaatttgttgaaaaaccccacctgtacaataacagttttagtttagatannnnnnncccc |
217 |
Q |
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| T |
18321451 |
tctggatcaaattcgttcatgaacgtgtctaactccacaccaatttgttgaaaaaccccacctgtacaataacagttttagtttagatttttttttcccc |
18321550 |
T |
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| Q |
218 |
tgcaaacttggtaaattaaagtgttaagagtttcatatctttgtagaaccgacactttaaattgaaggcatgtctggtgtctgatgcgtgtcagtattcg |
317 |
Q |
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| T |
18321551 |
tgcaaacttggtaaattaaagtgtt-agagtttcatatctttgtagaaccgacactttaaattgaaggcatgtctggtgtctgatgcatgtcag--ttcg |
18321647 |
T |
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| Q |
318 |
atattgtagttacagttaggtacttctacttctaactttattaccgatgtctacgtgtcagtgttgtttct |
388 |
Q |
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| T |
18321648 |
atattgtagttacagttaggtacttctacttctaactttattaccgatgtctacgtgtcagtgttgtttct |
18321718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 13338568 - 13338600
Alignment:
| Q |
265 |
accgacactttaaattgaaggcatgtctggtgt |
297 |
Q |
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| T |
13338568 |
accgacactttaaattgaaggcatgtttggtgt |
13338600 |
T |
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