View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3569_low_6 (Length: 273)

Name: NF3569_low_6
Description: NF3569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3569_low_6
NF3569_low_6
[»] chr8 (1 HSPs)
chr8 (1-265)||(40391201-40391465)
[»] chr7 (5 HSPs)
chr7 (32-218)||(34706753-34706939)
chr7 (88-184)||(3312555-3312649)
chr7 (88-158)||(3310869-3310937)
chr7 (156-252)||(32945329-32945425)
chr7 (144-193)||(16250396-16250445)
[»] scaffold0101 (1 HSPs)
scaffold0101 (93-199)||(564-667)
[»] chr1 (1 HSPs)
chr1 (72-268)||(18513819-18514016)
[»] chr4 (3 HSPs)
chr4 (110-265)||(25126238-25126392)
chr4 (154-265)||(15706660-15706773)
chr4 (141-181)||(44277979-44278019)
[»] chr3 (3 HSPs)
chr3 (72-184)||(32657283-32657394)
chr3 (175-265)||(15777344-15777433)
chr3 (143-268)||(18705523-18705648)
[»] scaffold0505 (1 HSPs)
scaffold0505 (83-169)||(4709-4793)
[»] chr5 (1 HSPs)
chr5 (196-264)||(39435961-39436029)
[»] scaffold0009 (1 HSPs)
scaffold0009 (150-209)||(160400-160459)
[»] chr2 (3 HSPs)
chr2 (191-265)||(32623604-32623677)
chr2 (186-265)||(27386940-27387020)
chr2 (142-182)||(29601936-29601976)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 40391201 - 40391465
Alignment:
Q  1 agaacacaaacagccgcaaggaacacaacataaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaaagtagagcacaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40391201 agaacacaaacagccgcaaggaacacaacataaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaaagtagagcacaaatt 40391300  T
Q  101 taacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaataaaactct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||     
T  40391301 taacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatataacccttacgatgaataaaactcc 40391400  T
Q  201 cccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 265  Q
    ||||||| ||||||||||  |||||||||||||| || |||||||||||||||||||||||||||    
T  40391401 cccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctc 40391465  T

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Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 34706753 - 34706939
Alignment:
Q  32 aaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaa 131  Q
    |||||| |||||||||||||| |||| | |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34706753 aaccacgaatttaacacatcaacatcgtgaatttagaaacaatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaa 34706852  T
Q  132 acaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaataaaactctcccttacttctagttttg 218  Q
    |||||||||||||||| |||||||||| ||||||||| || || ||| ||||| ||| |||||| ||| ||||||| ||||||||||    
T  34706853 acaaagaagaaaaacataaacccttcaatactcatatattcatccaatccttacgataaataaacctcccccttacctctagttttg 34706939  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 3312555 - 3312649
Alignment:
Q  88 tagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaaccctta 184  Q
    |||||||||||| ||||||   |||||||||||||||   |||||||| |||||||||||||||||||||||||| || || || ||||||||||||    
T  3312555 tagagcacaaatataacata--aattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaaccctta 3312649  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 3310869 - 3310937
Alignment:
Q  88 tagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttca 158  Q
    ||||||| |||||||||||   |||||||||||||||   |||||||| ||||||||||||||||||||||    
T  3310869 tagagcataaatttaacata--aattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttca 3310937  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 32945329 - 32945425
Alignment:
Q  156 tcactactcatatgtttatacaacccttaggatgaataaaactctccc-ttacttctagttttgtaaaattgatggttttttaggttgaaatctctct 252  Q
    ||||||| |||||||| |||||||| ||| |||||||| ||||| ||| |||| ||||||||||  ||||||||| |||  || ||||||||||||||    
T  32945329 tcactacccatatgttcatacaacc-ttatgatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctct 32945425  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 16250445 - 16250396
Alignment:
Q  144 aacacaaacccttcactactcatatgtttatacaacccttaggatgaata 193  Q
    |||||||||||||| |||| || ||||| |||||||||||| ||||||||    
T  16250445 aacacaaacccttcgctacccacatgttcatacaacccttatgatgaata 16250396  T

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Target: scaffold0101 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 667 - 564
Alignment:
Q  93 cacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaat 192  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||   ||||||| |||||||    
T  667 cacaaatttaacatctcaattcattaaaagattaagaaaacgaagaagaaaaacacaaacccttcactacccatatgttcat---acccttacgatgaat 571  T
Q  193 aaaactc 199  Q
    |||||||    
T  570 aaaactc 564  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 268
Target Start/End: Complemental strand, 18514016 - 18513819
Alignment:
Q  72 aatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaa-gaagaaaaacacaaacccttcactactcatatgt 170  Q
    ||||||| ||||||| || |||| |||||||||||   |||| |||||||||| | ||||||||| |||||||| || ||||| ||||||||  ||||||    
T  18514016 aatcacaacaacaaattacagcataaatttaacatg--aatttattaaaagatcatgaaaacaaaagaagaaaatcataaacctttcactacctatatgt 18513919  T
Q  171 ttatacaacccttaggatgaataaa-act-ctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcact 268  Q
    | |||||||||||| | |||||| | ||| | ||||||| | ||||||||  ||||||||| |||  || ||| |||||||||| |||||||||||||||    
T  18513918 tcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctcact 18513819  T

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Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 25126392 - 25126238
Alignment:
Q  110 aattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaata-aaact-ctcccttac 207  Q
    |||| |||||||||| |||||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||   ||||||| | ||| | ||| |||    
T  25126392 aatttattaaaagatcaagaaaacaaagaagaaaaacataaatccttcactacctatatgtttatacaaccctt---atgaatagagactccccccatac 25126296  T
Q  208 ttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 265  Q
     ||||||||||  ||||||||| |||  || ||| |||| ||||| ||||||||||||    
T  25126295 ctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctc 25126238  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 265
Target Start/End: Original strand, 15706660 - 15706773
Alignment:
Q  154 cttcactactcatatgtttatacaacccttaggatgaataaa-actctccc-ttacttctagttttgtaaaattgatggttttttaggttgaaatctctc 251  Q
    ||||||||||||| || | ||||||| |||| | |||||| | |||| ||| |||| ||||||||||  ||||||||| ||| ||| ||||||||||| |    
T  15706660 cttcactactcatgtgatcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccc 15706759  T
Q  252 tttaggttcttctc 265  Q
    ||||| ||||||||    
T  15706760 tttagattcttctc 15706773  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 44278019 - 44277979
Alignment:
Q  141 aaaaacacaaacccttcactactcatatgtttatacaaccc 181  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  44278019 aaaaacacaaacccttcactacccatatgttcatataaccc 44277979  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 32657394 - 32657283
Alignment:
Q  72 aatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaa-aaacacaaacccttcactactcatatgt 170  Q
    ||||||| |||| || |||||||||||||||||||   ||||||||||||||| | ||||||||||||||| ||||||| |  ||| ||||| |||||||    
T  32657394 aatcacaacaaccaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaaagaagaagaaacacagattctttactacccatatgt 32657297  T
Q  171 ttatacaaccctta 184  Q
    | ||||||||||||    
T  32657296 tcatacaaccctta 32657283  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 15777433 - 15777344
Alignment:
Q  175 acaacccttaggatgaataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 265  Q
    |||||||||| |||||||||||||| ||||||| ||||| |||| |||| ||||   ||  || | |||||||||||| ||||||||||||    
T  15777433 acaacccttatgatgaataaaactcccccttacctctag-tttgcaaaagtgataaattcctacggtgaaatctctctctaggttcttctc 15777344  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 268
Target Start/End: Complemental strand, 18705648 - 18705523
Alignment:
Q  143 aaacacaaacccttcactactcatatgtttatacaacccttaggatgaataaa-actctcccttacttctagttttgtaaaattgatggttttttaggtt 241  Q
    |||||||||||||||||||| | |||||| |||||||| ||| | | |||| | |||| ||| ||| |||||||||   ||||||||| |||  || | |    
T  18705648 aaacacaaacccttcactacccttatgttcatacaacc-ttatggtaaatagagactcccccatacctctagttttacgaaattgatgatttcatatggt 18705550  T
Q  242 gaaatctctctttaggttcttctcact 268  Q
    ||||||||||| || ||||||||||||    
T  18705549 gaaatctctctctacgttcttctcact 18705523  T

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Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 4709 - 4793
Alignment:
Q  83 caaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatg 169  Q
    |||| |||||||||||||||||||   ||||||| |||| |  | |||||||| |||||||||||||||||||||||||| ||||||    
T  4709 caaattagagcacaaatttaacatg--aattcatcaaaaaaacatgaaaacaaggaagaaaaacacaaacccttcactacccatatg 4793  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 39436029 - 39435961
Alignment:
Q  196 actctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttct 264  Q
    |||| ||||||| ||||||||||| ||||||||| |||  || | |||||||||||||||| |||||||    
T  39436029 actcccccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttagattcttct 39435961  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 160400 - 160459
Alignment:
Q  150 aacccttcactactcatatgtttatacaacccttaggatgaataaaactctcccttactt 209  Q
    ||||||||||||| || |||  || |||||||||| |||||||||||||| |||||||||    
T  160400 aacccttcactacccacatgagtaaacaacccttatgatgaataaaactcccccttactt 160459  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 32623677 - 32623604
Alignment:
Q  191 ataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 265  Q
    ||||||||| |||| || |||||||||| |||||||||| |||| || | |||||||||||| ||| ||||||||    
T  32623677 ataaaactccccct-acctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctc 32623604  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 27387020 - 27386940
Alignment:
Q  186 gatgaataaaactctcc-cttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 265  Q
    |||||||||||| | || ||||| ||||||||||  ||||| ||| |||| || | |||||||||||| ||||||||||||    
T  27387020 gatgaataaaacccccctcttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctc 27386940  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 29601936 - 29601976
Alignment:
Q  142 aaaacacaaacccttcactactcatatgtttatacaaccct 182  Q
    |||||| |||||||||||||| |||||||| ||||||||||    
T  29601936 aaaacaaaaacccttcactacccatatgttcatacaaccct 29601976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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