View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_10 (Length: 528)
Name: NF3570_high_10
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 200 - 512
Target Start/End: Complemental strand, 44153157 - 44152822
Alignment:
| Q |
200 |
aattaacaggatcttactactatactaattataccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
299 |
Q |
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| T |
44153157 |
aattaacaggatcttactactatactaattgtaccttagaaatgaggacattaatcccagcatgcttgttgtcccaaccaaactcattaatggtgtcacc |
44153058 |
T |
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| Q |
300 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgcctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
399 |
Q |
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| T |
44153057 |
agctctcaaaacaacctcgttacgaataatgtattctctgtatagacgtctacgcgaggccttgtgcaaccacgctgcagcccaaagtaactcatcctat |
44152958 |
T |
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| Q |
400 |
tttccaattaattaaat-----taaacatattt------ttatgatgattc------------taaaatactaatcttatagagaaaacaacggtaagta |
476 |
Q |
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| T |
44152957 |
tttccaattaattaaattaaattaaacatatttttattattatgatgattctaacaaaccaaataaaatactaatcttatagagaaaacaacggtaagta |
44152858 |
T |
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| Q |
477 |
ttaaatactcctacacggaggtattattctgttact |
512 |
Q |
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| T |
44152857 |
ttaaatactcctacatagaggtattgttatgttact |
44152822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 44153301 - 44153187
Alignment:
| Q |
2 |
aatgagcagtactatctatcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaacacatacaagacaaacaaaacttcg |
101 |
Q |
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| T |
44153301 |
aatgagcagtactatctatcatactgcgctcccacatgcctaacggggaatgcaagacaataggaacaaaaacaacacatacaagacaaacaaaacttcg |
44153202 |
T |
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| Q |
102 |
ataagcacccacaca |
116 |
Q |
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| T |
44153201 |
ataagcacccacaca |
44153187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 25013303 - 25013347
Alignment:
| Q |
17 |
ctatcatactgcgctcccacatgcctaacggggaatgcaagacaa |
61 |
Q |
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| T |
25013303 |
ctatcacactgcgctcccacatgcccaacgaggcatgcaagacaa |
25013347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 55014070 - 55014030
Alignment:
| Q |
256 |
ccagcatgcttgttgtcccaaccaaactcattaatggtgtc |
296 |
Q |
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| T |
55014070 |
ccagcatgcttgttgtcccaaccgaactcattgatgttgtc |
55014030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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