View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_15 (Length: 454)
Name: NF3570_high_15
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 1739295 - 1739735
Alignment:
| Q |
1 |
aattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatannnnnnnactctttatggagttatttgtattttttagaatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1739295 |
aattgacaaatcaattacatgtgtcataaaagaactgagaaatcaagaaaaccaatatttttttactctttatggagttatttgtattttttagaatatg |
1739394 |
T |
|
| Q |
101 |
tttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtc |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1739395 |
tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc |
1739494 |
T |
|
| Q |
201 |
ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatatacttgatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739495 |
ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatatacttgatta |
1739594 |
T |
|
| Q |
301 |
gtagtcgattcttgaatcagataccaagttttnnnnnnnnnntcacgtgttgtttaatggcaagagtttaaccttttataacttaaaagtatataattta |
400 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739595 |
gtagttgattcttgaatcagataccaagtttaaaaaaaaaaaacacgtgttgtttaatggcaagagtttaaccttttataacttaaaagtatataattta |
1739694 |
T |
|
| Q |
401 |
aatccgctcaatgactattgtagtaaaatgacgattaatgt |
441 |
Q |
| |
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| T |
1739695 |
aatccgctcaatgactattgcagtaaaatgacgattaatgt |
1739735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 101 - 282
Target Start/End: Original strand, 1717925 - 1718106
Alignment:
| Q |
101 |
tttagatatatagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtc |
200 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||| |
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| T |
1717925 |
tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc |
1718024 |
T |
|
| Q |
201 |
ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagtta |
282 |
Q |
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| T |
1718025 |
ccactatgctcaaaaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagtta |
1718106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 292
Target Start/End: Original strand, 1754878 - 1755050
Alignment:
| Q |
120 |
aaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtcccactatgctcaaaaccat |
219 |
Q |
| |
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|||| |||||||| ||| |||||||||||||||||||| || |||||||| ||| |||||||| || ||||||||||||| ||||| || ||| ||||| |
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| T |
1754878 |
aacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattaccat |
1754977 |
T |
|
| Q |
220 |
tttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
292 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||| || ||||||||||||| |
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|
| T |
1754978 |
tttgagaaccttcaactgcatgcaagtccacaatcactttcatcccatggattctgtaaattacaaagatata |
1755050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 292
Target Start/End: Original strand, 1749254 - 1749435
Alignment:
| Q |
111 |
tagatacataaccgttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctttatatccatctcttgtcccactatgct |
210 |
Q |
| |
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|||||||| |||| || ||||||||| || || |||| |||||||| || ||||| |||||| |||||||| |||||||||||||||| |||||||| | |
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| T |
1749254 |
tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt |
1749353 |
T |
|
| Q |
211 |
caaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagatata |
292 |
Q |
| |
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|| ||||||||||||||||||| |||||||| || ||||||||||||||| |||| | |||||| ||| ||||||||| |
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| T |
1749354 |
cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatctcatgatttctgcaatttagaaagatata |
1749435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 38733119 - 38733148
Alignment:
| Q |
302 |
tagtcgattcttgaatcagataccaagttt |
331 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38733119 |
tagtcgattcttgaatcagataccaagttt |
38733148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 332
Target Start/End: Complemental strand, 39145682 - 39145652
Alignment:
| Q |
302 |
tagtcgattcttgaatcagataccaagtttt |
332 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
39145682 |
tagtcgattcttgaatcagataccaagtttt |
39145652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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