View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_18 (Length: 376)
Name: NF3570_high_18
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 35079201 - 35079259
Alignment:
| Q |
10 |
atgaaagagaaaattggacaggaatacaaacatgcacaaaagcaccacctccactaaca |
68 |
Q |
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| T |
35079201 |
atgaaagagaaaattggacaggaatacaaacatgcacaaaagcaccacctccactaaca |
35079259 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 35079302 - 35079359
Alignment:
| Q |
301 |
tgcaaattgtggttttattcaataaatgtgaaatttatagatggcctccggctatgact |
359 |
Q |
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| T |
35079302 |
tgcaagttggggttttattcaataaatgtgaa-tttatagatggcctccggctatgact |
35079359 |
T |
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