View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_19 (Length: 366)
Name: NF3570_high_19
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 55721845 - 55722188
Alignment:
| Q |
12 |
atgagcttcggctcccatcccttgaatacaagaccaatcacgaagcatatcatgtgttcgtcgtataaaagtctttttctcttatttattactcattatg |
111 |
Q |
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| T |
55721845 |
atgagcttcggctcccatcccttgaatacaagaccaatcacgaagcatatcatgtgttcgtcgtataaaagtctttttctcttatttatgactcattatg |
55721944 |
T |
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| Q |
112 |
tcgcctctattgacactatattgtaacaaattcaaacatgatgcggttagaaagtgtttgcagaacctggactgaaagctcaacaaaactgtcagcacga |
211 |
Q |
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| T |
55721945 |
tcgcctctattgacactatattgtaacaaattcaaacatgattcagttagaaagtgtttgcagaacctggactgaaagctcaacaaaactgtcagcacga |
55722044 |
T |
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| Q |
212 |
tacatcgatgatttattgtactccgaaaaccagtaacatcccatatatgttttgctttctcacagttgat-aaaacaagagactcattaacgtca----t |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
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| T |
55722045 |
tacatcgatgatttattgtactccgaaaaccagtaacatcccatatatgttttgctttctcacagttgataaaaacaagagactcattaatgtcatattt |
55722144 |
T |
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| Q |
307 |
atcatagtttgaaatgcaatgttcacaagtataagttttttcgt |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55722145 |
atcatagtttgaaatgcaatgttcacaagtataagttttttcgt |
55722188 |
T |
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