View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_20 (Length: 366)
Name: NF3570_high_20
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 345
Target Start/End: Original strand, 43555111 - 43555287
Alignment:
| Q |
167 |
aattaataaagctagctagaaaaatctagcaccgaagaagatattattaccaacacaagcatcaagatgttcacctaccgtggtttagggttttggttct |
266 |
Q |
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| T |
43555111 |
aattaacaaagctagctagaaaa-tctagtactgagga-gatattattaccagcacaggcatcaagacgttcacctacccttgtttagggttttggttcc |
43555208 |
T |
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| Q |
267 |
tttgtcccttttgatgctaatgggtgtagtcaccttgtgtatatccacaagagatcgatgtttcttcttctcatgatga |
345 |
Q |
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| T |
43555209 |
tttgtcccttttgatgctaatgcgtgtagtcaccttgtgtatatccacaagagatcgatatttcttcatctcttgatga |
43555287 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 34293826 - 34293871
Alignment:
| Q |
4 |
taaaaccttgaggaggagcacactctcaaa-tccaaaccaatacca |
48 |
Q |
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| T |
34293826 |
taaaactttgaggaggagcacactcccaaattccaaaccaatacca |
34293871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16918585 - 16918633
Alignment:
| Q |
1 |
acctaaaaccttgaggaggagcacactctcaaat-ccaaaccaatacca |
48 |
Q |
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|||||| ||||||||||||||||||||| || || |||||||||||||| |
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| T |
16918585 |
acctaagaccttgaggaggagcacactcccagatcccaaaccaatacca |
16918633 |
T |
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