View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_21 (Length: 362)
Name: NF3570_high_21
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 28321746 - 28322081
Alignment:
| Q |
11 |
cacagaaggaaagtgtggaaaaaaccctaagaagatagtgt-gtgcatcaaataatcattttcaataaaaatttaatgttaacatgcaccttgtggagaa |
109 |
Q |
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| T |
28321746 |
cacagaaggaaagtgtggaaaaaaccctaagaagatagtgttgtgcatcaaataatcattttcaataaaaatttaatgttaacatgcaccttgtggagaa |
28321845 |
T |
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| Q |
110 |
aaaatgatgtctcccctactgcaatggtaacatcacttgtaagtccagttgtacaaaccctgtagcaagataaaatatgatcaaataatcattaattgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28321846 |
aaaatgatgtctcccctactgcaatggtaacatcacttgtaagtccagttgtacaaaccctgtagcaagataaaatatgatcaaataatcattaattgaa |
28321945 |
T |
|
| Q |
210 |
ccattaagaaaaactatttgttgaacctatttgaacgtaacnnnnnnnctctattgaagcaatatgatatacaaagtaccatatcatatacatacnnnnn |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28321946 |
ccattaagaaaaactatttgttgaacctatttgaacgtaactttttttctctattgaagcaatatgatatacaaagtaccatatcatatacatacaaaaa |
28322045 |
T |
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| Q |
310 |
nnnntattcttaccatgtgtggccatcacgacgaaat |
346 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
28322046 |
aaaa-attcttaccatgtgtggccatcacgacgaaat |
28322081 |
T |
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