View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_23 (Length: 347)
Name: NF3570_high_23
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 56 - 317
Target Start/End: Original strand, 46005921 - 46006182
Alignment:
| Q |
56 |
gattgcctgatattacagcagggtgcggtgctataataaatgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattt |
155 |
Q |
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| T |
46005921 |
gattccctgatattacagcagggtacggtgctataataaatgatagtcctccgatcacaattgtacggtcgagattgttttaactaaaaatacacaattt |
46006020 |
T |
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| Q |
156 |
tcaatcttaatccttcgatctcagatggacggctaagattgaatacttcgtgaaactgcatgcatttgctgcagcaaaacctggtccgtcttttttcttt |
255 |
Q |
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| T |
46006021 |
ttaatcttaatccttcgatctcagatggatggctaagattgaatacttcgtgaaactgcatgcatttgctgcagcaaaacctggtccgtcttttttcctt |
46006120 |
T |
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| Q |
256 |
ggtagattcactcatctaccatggtgtaccttaactcaacttgtagatagtatatttattta |
317 |
Q |
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| T |
46006121 |
ggtagattcactcatctaccatggtgtaccttaactcaacttgtagatagtatttttattta |
46006182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 46005853 - 46005900
Alignment:
| Q |
8 |
taacattactattcttttaaactttcattctattagaatcgatttaat |
55 |
Q |
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| T |
46005853 |
taacattactattcttttaaactttcattatattagaatcgatttaat |
46005900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 11591295 - 11591186
Alignment:
| Q |
96 |
tgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagatt |
195 |
Q |
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| T |
11591295 |
tgatagccgtccgatcacaattatacggttgagattgttttaact--aaagacacgatttttaatctcaaccgttcgatctcaaacggacggctgagatt |
11591198 |
T |
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| Q |
196 |
gaatacttcgtg |
207 |
Q |
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| T |
11591197 |
gaaaactgcgtg |
11591186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 40097176 - 40097263
Alignment:
| Q |
126 |
gagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagattgaatacttcgtgaaactg |
213 |
Q |
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| T |
40097176 |
gagattgttttaattaaaaagacacagttttgatttttaaccgtttgatctcagatgaacggccaagattgaaaactgcttgaaactg |
40097263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 10250626 - 10250527
Alignment:
| Q |
83 |
gtgctataataaatgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatg |
182 |
Q |
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| T |
10250626 |
gtgctataatgaatgataaccgttaaatcacaattgttaggttgggattgttttaactaaaaagacacaattttcaatctcaaccattcgatcttagatg |
10250527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 5743603 - 5743701
Alignment:
| Q |
96 |
tgatagtcgtccgatcgcaattgtacggtcgagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatggacggctaagat |
194 |
Q |
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| T |
5743603 |
tgatagtcgtccgatcacagttggatggtagaaatcgttttaattaaaaatacacagttttcaatctcaaccgttctatctaagatgaacggctgagat |
5743701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 52208832 - 52208776
Alignment:
| Q |
126 |
gagattgttttaactaaaaatacacaattttcaatcttaatccttcgatctcagatg |
182 |
Q |
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| T |
52208832 |
gagattgttttaactaaaaacacaaagttttcaatctcaaccgttcgatctgagatg |
52208776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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