View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3570_high_3 (Length: 943)

Name: NF3570_high_3
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3570_high_3
NF3570_high_3
[»] scaffold0016 (4 HSPs)
scaffold0016 (658-943)||(7647-7932)
scaffold0016 (83-307)||(7363-7587)
scaffold0016 (554-657)||(60352-60455)
scaffold0016 (17-84)||(7140-7205)
[»] chr5 (3 HSPs)
chr5 (658-943)||(23384536-23384821)
chr5 (83-307)||(23384881-23385105)
chr5 (17-84)||(23385263-23385328)
[»] chr1 (4 HSPs)
chr1 (306-402)||(40174168-40174264)
chr1 (554-658)||(33211874-33211978)
chr1 (551-657)||(40174414-40174520)
chr1 (462-518)||(40174329-40174384)
[»] chr8 (3 HSPs)
chr8 (306-402)||(8005091-8005187)
chr8 (583-657)||(8005361-8005435)
chr8 (463-521)||(8005254-8005311)
[»] scaffold0189 (3 HSPs)
scaffold0189 (306-402)||(28076-28172)
scaffold0189 (551-654)||(28323-28426)
scaffold0189 (462-521)||(28238-28296)
[»] chr2 (1 HSPs)
chr2 (583-657)||(38261610-38261684)
[»] scaffold0086 (1 HSPs)
scaffold0086 (556-627)||(28111-28182)


Alignment Details
Target: scaffold0016 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 658 - 943
Target Start/End: Complemental strand, 7932 - 7647
Alignment:
Q  658 tatctaatcaaacgatccatcaggttcataaaccactcgtaaaagagacactaattgccataatgttttccc-ataaacaattgtcaagagatggatttg 756  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  7932 tatctaatcaaacgatccatcgggttcataaaccactcgtaaaagagacactaattgccataatgttttccccagaaacaattgtcaagagatcgatttg 7833  T
Q  757 attgtttcaacaacctaatcgccattccaggaaatatttgagaaaatgtaatcgttgtcccgccccacaaaaagttcatttggatttgcacaannnnnnn 856  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  7832 attgtttcaacaacctaattgtcattccaggaaatatctgagaaaatgtaatcgttgtcccgccccacaaaaaattcatttggatttgcacaa-tttttt 7734  T
Q  857 ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaactacacaacccttcctcc 943  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7733 ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctcc 7647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 83 - 307
Target Start/End: Original strand, 7363 - 7587
Alignment:
Q  83 tgtgtctagaaaatttgtggtgtatgaaagagatccttaggatgtttgagttgatttccgggttgatattgaatttttcagatagaatgtttattgaggt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7363 tgtgtctagaaaatttgtggtgtatgaaagagatccttaggatgtttgagttgatttccgggttgatattgaatttttcagatagaatgtttattgaggt 7462  T
Q  183 ttctgtaaatgaagactttttgaggaatgacatataattattcaggtgtaaaaggggaaacatagagtttatctactttggctcaccgttgggtgaaaac 282  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  7463 ttctgtaaatgaagacttttcgaggaatgacacataattattcaagtgtaaaaggggaaacatcaagtttatctactttggcttaccggtgggtgaaaac 7562  T
Q  283 tcacggaagacgtcaatttagagac 307  Q
    |||||||||||||||||||||||||    
T  7563 tcacggaagacgtcaatttagagac 7587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 554 - 657
Target Start/End: Original strand, 60352 - 60455
Alignment:
Q  554 atccgcgtctaacgcgaatcgtacccttgtcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgcatc 653  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||||  |||||||    
T  60352 atccgcgtctgacgcgaatcgtacgcgtgtcgtacgcgcgtccgtgtcggaaccgcatcggagacggcgacacggcagatctcggccgcgtccgtgcatc 60451  T
Q  654 agag 657  Q
    ||||    
T  60452 agag 60455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 7140 - 7205
Alignment:
Q  17 ctaatgattcggttagttggattttttatttattttatgttatgaagatttggcttctgtgaaaaatg 84  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||    
T  7140 ctaatgattcggttagttggatttttt--ttattatatgttatgaagatttggcttttgtgaaaaatg 7205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 658 - 943
Target Start/End: Original strand, 23384536 - 23384821
Alignment:
Q  658 tatctaatcaaacgatccatcaggttcataaaccactcgtaaaagagacactaattgccataatgttttccc-ataaacaattgtcaagagatggatttg 756  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||    
T  23384536 tatctaatcaaacgatccatcgggttcataaaccactcgtaaaagagacactaattgccataatgttttccccagaaacaattgtcaagagatcgatttg 23384635  T
Q  757 attgtttcaacaacctaatcgccattccaggaaatatttgagaaaatgtaatcgttgtcccgccccacaaaaagttcatttggatttgcacaannnnnnn 856  Q
    ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  23384636 attgtttcaacaacctaattgtcattccaggaaatatctgagaaaatgtaatcgttgtcccgccccacaaaaaattcatttggatttgcacaa-tttttt 23384734  T
Q  857 ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaactacacaacccttcctcc 943  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23384735 ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctcc 23384821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 83 - 307
Target Start/End: Complemental strand, 23385105 - 23384881
Alignment:
Q  83 tgtgtctagaaaatttgtggtgtatgaaagagatccttaggatgtttgagttgatttccgggttgatattgaatttttcagatagaatgtttattgaggt 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23385105 tgtgtctagaaaatttgtggtgtatgaaagagatccttaggatgtttgagttgatttccgggttgatattgaatttttcagatagaatgtttattgaggt 23385006  T
Q  183 ttctgtaaatgaagactttttgaggaatgacatataattattcaggtgtaaaaggggaaacatagagtttatctactttggctcaccgttgggtgaaaac 282  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  23385005 ttctgtaaatgaagacttttcgaggaatgacacataattattcaagtgtaaaaggggaaacatcaagtttatctactttggcttaccggtgggtgaaaac 23384906  T
Q  283 tcacggaagacgtcaatttagagac 307  Q
    |||||||||||||||||||||||||    
T  23384905 tcacggaagacgtcaatttagagac 23384881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 23385328 - 23385263
Alignment:
Q  17 ctaatgattcggttagttggattttttatttattttatgttatgaagatttggcttctgtgaaaaatg 84  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||||||||    
T  23385328 ctaatgattcggttagttggatttttt--ttattatatgttatgaagatttggcttttgtgaaaaatg 23385263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 3e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 40174168 - 40174264
Alignment:
Q  306 acggcgatggcgattacaataaaagccatgaaattagaaccaagaagaagggaaggaagcagaaggtggcatcggaagaggtgtggtggtggaaaag 402  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||    
T  40174168 acggcgacggcgattacaataaaagccatgaaattagaaccaagaagaagggaaggaagcagacggcggcaccggaaaaggtgtggtggtggaaaag 40174264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 554 - 658
Target Start/End: Complemental strand, 33211978 - 33211874
Alignment:
Q  554 atccgcgtctaacgcgaatcgtacccttgtcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgcatc 653  Q
    |||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||| ||||||||    
T  33211978 atccacgtctgacgcgaatcgtacgcgtgtcgtacgcgcgtccgtgtcggaaccgcgttggagacggcaacacggcagatctcagccgcgtctgtgcatc 33211879  T
Q  654 agagt 658  Q
    |||||    
T  33211878 agagt 33211874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 551 - 657
Target Start/End: Original strand, 40174414 - 40174520
Alignment:
Q  551 aatatccgcgtctaacgcgaatcgtacccttgtcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgc 650  Q
    ||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||| || ||||||| ||||||| ||||||| ||||||| |||||    
T  40174414 aatatccgcgtctgacgcgaatcgtacgtgtgtcgtacgcgcgtccgtgtcggaaccgcatcagagacggtgacacggcggatctctgccgcgtctgtgc 40174513  T
Q  651 atcagag 657  Q
    |||||||    
T  40174514 atcagag 40174520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 462 - 518
Target Start/End: Original strand, 40174329 - 40174384
Alignment:
Q  462 ctgtgattggccgcgtcgggtttacacgagagcagtgtcggatccgtgtccgaccaa 518  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||    
T  40174329 ctgtgattggccgtgtcgg-tttacaccagagcagtgtcggatccgtgtccgaccaa 40174384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 8005091 - 8005187
Alignment:
Q  306 acggcgatggcgattacaataaaagccatgaaattagaaccaagaagaagggaaggaagcagaaggtggcatcggaagaggtgtggtggtggaaaag 402  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| || || |||||||||||||||||||    
T  8005091 acggcgacggcgattacaataaaagccatgaaattagaaccaagaagaagggaaggaagcagacggcggcaccgaaaaaggtgtggtggtggaaaag 8005187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 8005361 - 8005435
Alignment:
Q  583 tcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgcatcagag 657  Q
    |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||    
T  8005361 tcgtacgcgcgtccgtgtcggaaccgcgtcggagacggtggcacggcggatctcagccgcgtctgtgcatcagag 8005435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 8005254 - 8005311
Alignment:
Q  463 tgtgattggccgcgtcgggtttacacgagagcagtgtcggatccgtgtccgaccaaatg 521  Q
    |||||||||||||||||| ||||||| | || ||||||||||||||||| |||||||||    
T  8005254 tgtgattggccgcgtcgg-tttacaccaaagtagtgtcggatccgtgtcagaccaaatg 8005311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 306 - 402
Target Start/End: Original strand, 28076 - 28172
Alignment:
Q  306 acggcgatggcgattacaataaaagccatgaaattagaaccaagaagaagggaaggaagcagaaggtggcatcggaagaggtgtggtggtggaaaag 402  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||| ||||||||    
T  28076 acggcgacggcgattacaataaaaaccatgaaattagaaccaagaagaagggaaggaagcagacggcggcaccggaaaaggtgtggtgatggaaaag 28172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 551 - 654
Target Start/End: Original strand, 28323 - 28426
Alignment:
Q  551 aatatccgcgtctaacgcgaatcgtacccttgtcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgc 650  Q
    ||||||||||||| ||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||| ||||| | ||||||||||||| |||||    
T  28323 aatatccgcgtctgacgcgaatcgtacgcgtgtcgtacgtgcgtccatgtcggaaccgcgtcggagacggcggcacggcgaatctcagccgcgtctgtgc 28422  T
Q  651 atca 654  Q
    ||||    
T  28423 atca 28426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 521
Target Start/End: Original strand, 28238 - 28296
Alignment:
Q  462 ctgtgattggccgcgtcgggtttacacgagagcagtgtcggatccgtgtccgaccaaatg 521  Q
    ||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  28238 ctgtgattggccgcgtcgg-tttacaccagagcagtctcggatccgtgtccgaccaaatg 28296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 583 - 657
Target Start/End: Original strand, 38261610 - 38261684
Alignment:
Q  583 tcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacggaggatctcagccgcgtttgtgcatcagag 657  Q
    ||||||||  |||||||||||||||||| |||| ||| |||||||| ||||||||||||||| ||||||||||||    
T  38261610 tcgtacgcatgtccgtgtcggaaccgcgccggacacgtcgacacggcggatctcagccgcgtctgtgcatcagag 38261684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 627
Target Start/End: Original strand, 28111 - 28182
Alignment:
Q  556 ccgcgtctaacgcgaatcgtacccttgtcgtacgcgcgtccgtgtcggaaccgcgtcggagacggcgacacg 627  Q
    |||| ||| ||||||||||||||  ||||| ||||||||||| |||||||| ||| |||| |||| ||||||    
T  28111 ccgcatctgacgcgaatcgtaccagtgtcgcacgcgcgtccgagtcggaactgcgccggacacggtgacacg 28182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University