View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_35 (Length: 250)
Name: NF3570_high_35
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 40207317 - 40207099
Alignment:
| Q |
22 |
gtgggacgcaaggtgtctttaataagggcattcctatacatagttgcacaatgtttaggagcaatttgtggtgctggacttgcaaaggggttccaaacat |
121 |
Q |
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| T |
40207317 |
gtgggacgcaaggtgtctttaataagggcattcctatacatagttgcacaatgtttaggagcaatttgtggtgctggacttgcaaaggggttccaaacat |
40207218 |
T |
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| Q |
122 |
catactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggt |
221 |
Q |
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| T |
40207217 |
catactacaacaggtacaaaggaggagttaacactgtttctgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggt |
40207118 |
T |
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| Q |
222 |
ctacactgttttctctgct |
240 |
Q |
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| T |
40207117 |
ctacactgttttctctgct |
40207099 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 21793780 - 21793857
Alignment:
| Q |
162 |
tgatggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
239 |
Q |
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| T |
21793780 |
tgatggctacaacaaaggcacagctttaggtgctgaaatcattggtacctttgttcttgtctacactgtcttctctgc |
21793857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 55220931 - 55221005
Alignment:
| Q |
166 |
ggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgct |
240 |
Q |
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| T |
55220931 |
ggttacagcaaaggctctgccctaggtgctgaaatgatcggaacttttgtgttggtttacactgttttctctgct |
55221005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 42796516 - 42796568
Alignment:
| Q |
187 |
ttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
239 |
Q |
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| T |
42796516 |
ttaggtgctgagattgttggtacctttgttttggtttacaccgttttctctgc |
42796568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 41037332 - 41037379
Alignment:
| Q |
193 |
gctgaaattattggtacctttgttttggtctacactgttttctctgct |
240 |
Q |
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| T |
41037332 |
gctgagattgttggtacctttgttcttgtctacactgttttctctgct |
41037379 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 40835239 - 40835165
Alignment:
| Q |
165 |
tggttacagcaaaggcactgctttaggtgctgaaattattggtacctttgttttggtctacactgttttctctgc |
239 |
Q |
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|||||| |||||||| |||| |||||||||||||| ||||| ||||||||| | || ||||| || |||||||| |
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| T |
40835239 |
tggttatagcaaaggaactgggttaggtgctgaaataattggaacctttgttcttgtttacaccgtgttctctgc |
40835165 |
T |
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