View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3570_high_36 (Length: 250)

Name: NF3570_high_36
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3570_high_36
NF3570_high_36
[»] chr7 (8 HSPs)
chr7 (15-133)||(4328514-4328632)
chr7 (11-133)||(4316448-4316570)
chr7 (15-133)||(25033737-25033856)
chr7 (192-250)||(4328691-4328749)
chr7 (9-133)||(6711861-6711980)
chr7 (199-246)||(4317042-4317089)
chr7 (95-133)||(4541779-4541817)
chr7 (101-133)||(2325284-2325316)
[»] chr6 (3 HSPs)
chr6 (15-133)||(32795923-32796042)
chr6 (14-133)||(13168921-13169041)
chr6 (95-133)||(26822468-26822506)
[»] chr2 (4 HSPs)
chr2 (15-133)||(22577745-22577862)
chr2 (41-133)||(24018043-24018135)
chr2 (86-133)||(29952180-29952225)
chr2 (101-133)||(31590019-31590051)
[»] chr4 (2 HSPs)
chr4 (15-133)||(13882886-13883005)
chr4 (48-88)||(11048934-11048975)
[»] chr1 (2 HSPs)
chr1 (15-60)||(24680751-24680796)
chr1 (49-115)||(1869886-1869952)
[»] scaffold0855 (1 HSPs)
scaffold0855 (66-133)||(4079-4149)
[»] scaffold0847 (1 HSPs)
scaffold0847 (66-133)||(4244-4314)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 4328514 - 4328632
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgataaaattaataataaaaagc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328514 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgataaaattaataataaaaagc 4328613  T
Q  115 gcctcgggattattggttc 133  Q
    |||||||||||||||||||    
T  4328614 gcctcgggattattggttc 4328632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 4316448 - 4316570
Alignment:
Q  11 cagagagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgataaaattaataataaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||||||||||| ||||    
T  4316448 cagagagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttataggttataaagtttgggttttttattgataaaattaatattaaa 4316547  T
Q  111 aagcgcctcgggattattggttc 133  Q
    |||||| | ||||||||||||||    
T  4316548 aagcgcattgggattattggttc 4316570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 25033737 - 25033856
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattga--taaaattaataataaaaa 112  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |||||| || ||||||||||| ||||||||||  ||||||||| ||||||||    
T  25033737 gagttgttgtaattatgattctctttttaacggtgattagctgaaagattaaagtttgaaaagtttgga-ttttgattgatgtaaaattaaaaataaaaa 25033835  T
Q  113 gcgcctcgggattattggttc 133  Q
    ||| |||||||||||||||||    
T  25033836 gcgtctcgggattattggttc 25033856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 4328691 - 4328749
Alignment:
Q  192 tgtcgcggaaaattcccaataataaaagatgaataataagtttgttggctgctcttttt 250  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4328691 tgtcgcggaaaattcccaataataaaagatgaataataagtctgttggctgctcttttt 4328749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 6711861 - 6711980
Alignment:
Q  9 agcagagagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgat-aaaattaataat 107  Q
    ||||| ||| || ||||||| ||||||||| ||||| ||||||     ||||| |||||| || |||||||| |||||| |||| || ||||||||||||    
T  6711861 agcagggaggtgatgtaattttgattctctatttaatggtgat-----gaaagattaaagtttgaaaagttttgatttt-gattaatgaaaattaataat 6711954  T
Q  108 aaaaagcgcctcgggattattggttc 133  Q
    |||||||| |||||||||||||||||    
T  6711955 aaaaagcgtctcgggattattggttc 6711980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 4317042 - 4317089
Alignment:
Q  199 gaaaattcccaataataaaagatgaataataagtttgttggctgctct 246  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||||    
T  4317042 gaaaattcccaataacaaaagatgaataataagtctgatggctgctct 4317089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 4541817 - 4541779
Alignment:
Q  95 taaaattaataataaaaagcgcctcgggattattggttc 133  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  4541817 taaaaataataataaaaagcgccttgggattattggttc 4541779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 2325284 - 2325316
Alignment:
Q  101 taataataaaaagcgcctcgggattattggttc 133  Q
    ||||||||||||| |||||||||||||||||||    
T  2325284 taataataaaaagagcctcgggattattggttc 2325316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 32795923 - 32796042
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgat--aaaattaataataaaaa 112  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |||||| || ||||||||||| || |||| |||  |||||||||||||||||    
T  32795923 gagttgttgtaattatgattctctttttaatggtgattagctgaaagattaaagtttgaaaagtttgga-ttatgatcgatacaaaattaataataaaaa 32796021  T
Q  113 gcgcctcgggattattggttc 133  Q
    ||| |||||||||||||||||    
T  32796022 gcgtctcgggattattggttc 32796042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 13169041 - 13168921
Alignment:
Q  14 agagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgat-aaaattaataataaaaa 112  Q
    ||||||||||||||| |||||||||||||||   |||||| ||||||||||||||||| ||||| || ||||||||||||||  |||||||| |||||||    
T  13169041 agagttgttgtaattttgattctctttttaaccatgattaactgaaagtttaaaggtttaaaaggtttgatttttgattgatgtaaattaatgataaaaa 13168942  T
Q  113 gcgcctcgggattattggttc 133  Q
    | || || |||||||||||||    
T  13168941 gtgcatcaggattattggttc 13168921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 26822506 - 26822468
Alignment:
Q  95 taaaattaataataaaaagcgcctcgggattattggttc 133  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  26822506 taaaagtaataataaaaagcgccttgggattattggttc 26822468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 22577745 - 22577862
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgataaaattaataataaaaagc 114  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||||| ||| | ||| |||||||||||||||   || | |||| ||||| ||||||||    
T  22577745 gagttgttgtaattttgattctctttttaatggtgattaactgaaagattaca-gttgaaaagtttggattttgatttaagaaaaataatagtaaaaagc 22577843  T
Q  115 gcctcgggattattggttc 133  Q
    || ||||||| ||||||||    
T  22577844 gcatcgggatcattggttc 22577862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 24018043 - 24018135
Alignment:
Q  41 ttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattgat-aaaattaataataaaaagcgcctcgggattattggttc 133  Q
    |||| |||||||||||||||| |||||| || |||||||| || |||||||| || |||||  |||||||||| ||||||||||||||||||||    
T  24018043 ttaatggtgattagctgaaagattaaagtttgaaaagttttga-ttttgatttatgaaaatatataataaaaaacgcctcgggattattggttc 24018135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 29952225 - 29952180
Alignment:
Q  86 tttgattgataaaattaataataaaaagcgcctcgggattattggttc 133  Q
    ||||||||||| ||  |||||||||||||| |||||||||||||||||    
T  29952225 tttgattgatataa--aataataaaaagcgtctcgggattattggttc 29952180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 31590019 - 31590051
Alignment:
Q  101 taataataaaaagcgcctcgggattattggttc 133  Q
    |||||||||||||||||||| ||||||||||||    
T  31590019 taataataaaaagcgcctcgagattattggttc 31590051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 13882886 - 13883005
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaagtttaaaggttaaaaagtttggatttttgattga-taaaattaataataaaaag 113  Q
    |||||||||| ||| |||||  |||||||  |||| ||||||||||| |||  | || ||||||| |||||||||||||| | ||| |||||||||||||    
T  13882886 gagttgttgtgattttgatttgctttttagtggtgtttagctgaaagattagggttttaaaagttgggatttttgattgattgaaaataataataaaaag 13882985  T
Q  114 cgcctcgggattattggttc 133  Q
     |||| |||||| |||||||    
T  13882986 tgccttgggattgttggttc 13883005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 11048975 - 11048934
Alignment:
Q  48 tgattagctgaaagttt-aaaggttaaaaagtttggattttt 88  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  11048975 tgattagatgaaagtttcaaaggttaaaaagtttggattttt 11048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 24680796 - 24680751
Alignment:
Q  15 gagttgttgtaattgtgattctctttttaaaggtgattagctgaaa 60  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||    
T  24680796 gagttgttgtaattatgattctctttttaatggtgattagctgaaa 24680751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 1869886 - 1869952
Alignment:
Q  49 gattagctgaaagtttaaaggttaaaaagtttggatttttgattga-taaaattaataataaaaagcg 115  Q
    ||||||||||||||||||||||| ||||||| ||||||||  |||| | ||| |||||||||||||||    
T  1869886 gattagctgaaagtttaaaggtt-aaaagttgggatttttatttgattgaaaataataataaaaagcg 1869952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 4149 - 4079
Alignment:
Q  66 aaggttaaaaagtttggattttt---gattgataaaattaataataaaaagcgcctcgggattattggttc 133  Q
    |||||| ||||||| ||||||||   |||||| || | |||||||||||||||| | ||||||||||||||    
T  4149 aaggttgaaaagttgggatttttatcgattgaaaataataataataaaaagcgcattgggattattggttc 4079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 4314 - 4244
Alignment:
Q  66 aaggttaaaaagtttggattttt---gattgataaaattaataataaaaagcgcctcgggattattggttc 133  Q
    |||||| ||||||| ||||||||   |||||| || | |||||||||||||||| | ||||||||||||||    
T  4314 aaggttgaaaagttgggatttttatcgattgaaaataataataataaaaagcgcattgggattattggttc 4244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University