View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_40 (Length: 241)
Name: NF3570_high_40
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_40 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2305203 - 2305426
Alignment:
| Q |
1 |
atatgttgtatgttttttacgtgaggaagttgtaattgtattttgtacacgtat--ctccacaaacaatttcacgccgcctctccatctttttctttgtt |
98 |
Q |
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| T |
2305203 |
atatgttgtatgttttttacgtgaggaagttgtaattgtattttgtacacgtatgtctccacaaacaatttcacgcc---tctccatctttttctttgtt |
2305299 |
T |
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| Q |
99 |
tcaatcaaaacttataatttttagatactttgaagtttaattaggtaacggtatccacagaaaaaacaaatttaagattttaaattattttaaaatcaat |
198 |
Q |
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| T |
2305300 |
tcaatcaaaacttataatttttagatactttgaagtttaattaggtaacggtatccacaggaaaaacaaatttaggattttaaattattttaaaatcaat |
2305399 |
T |
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| Q |
199 |
aaggataaaagaatggcatatcattga |
225 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
2305400 |
aaaaataaaagaatggcatatcattga |
2305426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 2337687 - 2337741
Alignment:
| Q |
168 |
atttaagattttaaattattttaaaatcaataaggataaaagaatggcatatcat |
222 |
Q |
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||||||||||| |||||||||||| |||||||| ||||||| ||| |||||||| |
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| T |
2337687 |
atttaagatttaaaattattttaacatcaataaaaataaaagtatgacatatcat |
2337741 |
T |
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