View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_42 (Length: 237)
Name: NF3570_high_42
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 30960264 - 30960470
Alignment:
| Q |
16 |
aatatcatggggccttactcatactgtgtggtagtttccttggttatcaagcaaaaagcacaactgctccatttgaatttcgattcaaatattcaactaa |
115 |
Q |
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| T |
30960264 |
aatatcatggggccttactcatactgtgtggtagtttccttggttatcaagcaaaaagcacaactgctccatttgaatttcgattcaaatattcaactaa |
30960363 |
T |
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| Q |
116 |
tgcacctcaatcactagtacttccatttggggaagcatttaaagcattctttccagaaatgacacaaatagcaaagttcatgttgtgttattttctgaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30960364 |
tgcacctcaatcactagtacttccatttggggaagcatttaaagcattctttccagaaatgacacaaatagcaaagttcattttgtgttattttctgaca |
30960463 |
T |
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| Q |
216 |
ttgatgt |
222 |
Q |
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||||||| |
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| T |
30960464 |
ttgatgt |
30960470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 30956389 - 30956485
Alignment:
| Q |
118 |
cacctcaatcactagtacttccatttggggaagcatttaaagcattctttccagaaatgacacaaatagcaaagttcatgttgtgttattttctgac |
214 |
Q |
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| T |
30956389 |
caccacaaacactagtacttgcctttggggaagcatttgaagtattctttccagaaataacacacatcacaaagttcatgttgtgttattttctgac |
30956485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 30956307 - 30956358
Alignment:
| Q |
42 |
tgtggtagtttccttggttatcaagcaaaaagcacaactgctccatttgaat |
93 |
Q |
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|||| ||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
30956307 |
tgtgttagtttcctcagttatcaagcaaaaaacacaactgctccatttgaat |
30956358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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