View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_high_9 (Length: 571)
Name: NF3570_high_9
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 44358189 - 44358472
Alignment:
| Q |
5 |
gagtgagatgaaatgcaatgtcttcagcagagcgtatatatggcactccaccgtatacttgatagcttgaaccagaagtnnnnnnnnnnnnnnnnngcaa |
104 |
Q |
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| T |
44358189 |
gagtgacatgaaatgcaatgtcttcagcagagcgtatatatggcactccaccgtatacttgatagcttgaaacagaagtaaaaaaaaaaaaa----gaaa |
44358284 |
T |
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| Q |
105 |
gtagttaattatgttgagatcataaacgnnnnnnn-cctcaaaaaat-ataaggttgtaattcatgaactta----caaagatgtccaattctctgtcca |
198 |
Q |
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| T |
44358285 |
gtagttaattatgttgagatcataaacgttttttttcctcaaaaaattataaggttgtaattcatgaacttaattacaaagatgtccaattctctgtcca |
44358384 |
T |
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| Q |
199 |
catggcaggcttattgggggagtttggtccagtaaaagtttctccacatctcatgccattgcatgtattgatctgcatttcataataa |
286 |
Q |
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| T |
44358385 |
catggcaggcttattgggggagtttggtccagtaaaagtttctccacatctcatgccattgcatgtattgatctgcatttcataataa |
44358472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 434 - 557
Target Start/End: Original strand, 44358554 - 44358677
Alignment:
| Q |
434 |
atggaactgaccacaggatcaggagcatcgggttgcttgcacatagcccatggtacacctgtattaagacccactgccatttttgcagcccattcaacat |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44358554 |
atggaactgaccacaggatcaggagcatcgggttgcttgcacataacccatggtacgcctgtattaagacccactgccatttttgcagcccattcaacat |
44358653 |
T |
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| Q |
534 |
actgcgatcctgcagttccaaatg |
557 |
Q |
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| T |
44358654 |
actgcgatcctgcagttccaaatg |
44358677 |
T |
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