View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3570_low_1 (Length: 1007)

Name: NF3570_low_1
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3570_low_1
NF3570_low_1
[»] chr2 (11 HSPs)
chr2 (18-1001)||(14768695-14769678)
chr2 (50-315)||(452551-452822)
chr2 (52-315)||(8179869-8180140)
chr2 (40-229)||(2609695-2609885)
chr2 (32-315)||(24584523-24584812)
chr2 (51-229)||(45368561-45368741)
chr2 (26-166)||(16291943-16292084)
chr2 (132-206)||(39287849-39287923)
chr2 (133-209)||(6464948-6465024)
chr2 (40-125)||(38453543-38453628)
chr2 (51-114)||(37281388-37281451)
[»] chr4 (15 HSPs)
chr4 (50-315)||(23907237-23907508)
chr4 (50-315)||(435308-435579)
chr4 (51-315)||(48623463-48623733)
chr4 (40-206)||(53703800-53703967)
chr4 (26-218)||(55769294-55769486)
chr4 (26-218)||(55833550-55833742)
chr4 (50-315)||(1777950-1778223)
chr4 (50-210)||(39707650-39707810)
chr4 (54-229)||(27451112-27451288)
chr4 (146-211)||(33369027-33369092)
chr4 (71-189)||(44860318-44860435)
chr4 (129-229)||(16002175-16002274)
chr4 (172-220)||(41598166-41598214)
chr4 (168-206)||(2296364-2296402)
chr4 (75-120)||(41005617-41005662)
[»] chr1 (12 HSPs)
chr1 (50-315)||(43241316-43241587)
chr1 (40-229)||(8671085-8671278)
chr1 (50-315)||(51441699-51441970)
chr1 (50-315)||(49348329-49348608)
chr1 (32-313)||(29173446-29173733)
chr1 (51-209)||(32405400-32405558)
chr1 (50-208)||(34828020-34828179)
chr1 (50-229)||(45833727-45833907)
chr1 (26-229)||(35829304-35829506)
chr1 (51-125)||(37463798-37463872)
chr1 (53-160)||(7813732-7813840)
chr1 (267-315)||(11681897-11681945)
[»] chr7 (18 HSPs)
chr7 (40-315)||(33350731-33351012)
chr7 (40-315)||(36651070-36651351)
chr7 (51-315)||(39907315-39907585)
chr7 (40-229)||(46356776-46356966)
chr7 (39-315)||(32629688-32629966)
chr7 (40-229)||(38606206-38606395)
chr7 (130-315)||(22346588-22346778)
chr7 (51-209)||(36870260-36870419)
chr7 (130-315)||(38896693-38896883)
chr7 (50-195)||(11593154-11593300)
chr7 (39-229)||(24178119-24178310)
chr7 (130-213)||(33738342-33738425)
chr7 (132-213)||(32483656-32483737)
chr7 (41-211)||(48055743-48055913)
chr7 (136-219)||(17101504-17101588)
chr7 (244-315)||(11592765-11592835)
chr7 (50-115)||(49028563-49028628)
chr7 (102-182)||(21520321-21520402)
[»] chr8 (17 HSPs)
chr8 (50-229)||(36566176-36566356)
chr8 (573-851)||(7166591-7166869)
chr8 (50-221)||(15216207-15216378)
chr8 (50-315)||(42854948-42855221)
chr8 (695-851)||(3269111-3269267)
chr8 (40-315)||(36544228-36544509)
chr8 (662-881)||(31173812-31174031)
chr8 (715-851)||(3264453-3264589)
chr8 (695-846)||(3288384-3288535)
chr8 (577-790)||(3400608-3400821)
chr8 (697-775)||(13806935-13807013)
chr8 (698-795)||(13785638-13785735)
chr8 (700-800)||(3409295-3409395)
chr8 (169-229)||(6184827-6184887)
chr8 (132-206)||(11130955-11131029)
chr8 (158-212)||(25984734-25984788)
chr8 (268-319)||(41445401-41445452)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-315)||(30544-30825)
[»] chr3 (10 HSPs)
chr3 (40-229)||(52137995-52138185)
chr3 (40-315)||(51448634-51448915)
chr3 (721-858)||(32412883-32413020)
chr3 (39-188)||(9258095-9258244)
chr3 (731-833)||(6907789-6907891)
chr3 (50-210)||(38849288-38849441)
chr3 (130-206)||(48220971-48221047)
chr3 (168-213)||(50630373-50630418)
chr3 (43-110)||(19736502-19736569)
chr3 (43-110)||(19757320-19757387)
[»] chr6 (9 HSPs)
chr6 (51-315)||(5260184-5260454)
chr6 (50-228)||(9705943-9706122)
chr6 (50-221)||(6082575-6082747)
chr6 (51-229)||(20428573-20428752)
chr6 (51-229)||(30670061-30670234)
chr6 (132-311)||(3629346-3629530)
chr6 (158-207)||(2681480-2681529)
chr6 (131-208)||(2208419-2208496)
chr6 (26-95)||(2680958-2681027)
[»] chr5 (18 HSPs)
chr5 (40-315)||(24177600-24177881)
chr5 (40-315)||(20318067-20318348)
chr5 (50-315)||(2076409-2076680)
chr5 (700-850)||(30415929-30416079)
chr5 (158-311)||(27039-27196)
chr5 (131-205)||(17212459-17212533)
chr5 (39-150)||(3301095-3301207)
chr5 (574-777)||(20836335-20836538)
chr5 (131-212)||(37123755-37123836)
chr5 (40-115)||(1288514-1288589)
chr5 (574-777)||(20809980-20810183)
chr5 (40-102)||(1274560-1274622)
chr5 (132-202)||(30418593-30418662)
chr5 (268-315)||(1288687-1288734)
chr5 (48-102)||(7605754-7605809)
chr5 (268-315)||(25937173-25937220)
chr5 (138-196)||(31503071-31503129)
chr5 (166-212)||(35685042-35685088)
[»] scaffold0113 (1 HSPs)
scaffold0113 (50-293)||(13191-13442)
[»] scaffold0045 (1 HSPs)
scaffold0045 (158-315)||(90134-90296)
[»] scaffold0171 (1 HSPs)
scaffold0171 (68-229)||(5614-5778)
[»] scaffold0286 (1 HSPs)
scaffold0286 (131-208)||(518-595)
[»] scaffold0468 (1 HSPs)
scaffold0468 (712-819)||(8209-8316)


Alignment Details
Target: chr2 (Bit Score: 881; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 881; E-Value: 0
Query Start/End: Original strand, 18 - 1001
Target Start/End: Complemental strand, 14769678 - 14768695
Alignment:
Q  18 gttttcggaaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctt 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769678 gttttgggaaattgtcggtggccccatcccgtgtcctcacactagttgatgctctctcatacatatcattgatagctccaatataaacaatcttaacctt 14769579  T
Q  118 tttcttcttattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769578 tttcttcttattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaat 14769479  T
Q  218 atcgttccatcagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctcc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769478 atcgttccatcagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctcc 14769379  T
Q  318 a-taaatcatcatttgataccgtaagttataagttcaaacgttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactca 416  Q
    | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14769378 attaaatcaccatttgataccgtaagttataagttcaaaggttgcttaaagtagcatgtcaaaattcgctataatctagtgaagaaacattataaactca 14769279  T
Q  417 ttagagaatgaccttactttgagcatacaagttcatgcgctataactttcctctataaactagtggtttgatctggccaaatagagccctatagnnnnnn 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
T  14769278 ttagagaatgaccttactttgagcatacaagttcatgcgctataactttcctctataaactagtggtttgatctggccaaatagagccttatag-ttttt 14769180  T
Q  517 nnnngtaatttattctcattctatgtgttgtgttgttttgtgttttataattatctaaggaatgaaggtgaactagtaaagcaaattgttggtgacgttt 616  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14769179 ttttgtaatttattctcattctatgtgttgtgttgttttgtgttttataattatctaaggaatgaaggtgaactagtaaagcaaattgtcggtgacgttt 14769080  T
Q  617 tcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaacctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaag 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14769079 tcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaacctcgtgtgcaaaaagtggccgagtttattgaaaaacattcaag 14768980  T
Q  717 caatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcataga 816  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14768979 caatgtttgtatgatagggatctagggaatgggtggatctggtaaaacaaccacagccaaatccatctacaatcgaattcatcgcaagtttgtgcataga 14768880  T
Q  817 agtttcgttgaaaatatcagagaagcttgtgaaaatgataattatagaggggttattcatttacagnnnnnnnttctttcagatgccctgaaaacaaagg 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  14768879 agtttcgttgaaaatatcagagaagcttgtgaaaatgataattatagaggggttattcatttacagaaaaaaattctttcagatgccctgaaaacaaagg 14768780  T
Q  917 agaagatagatagcattgggttgggagcaaataagttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgt 1001  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14768779 agaagatagatagtattgggttgggagcaaataagttggagacaagacttagagggaaaaaggtattcattgtacttgatgatgt 14768695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 452551 - 452822
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 148  Q
    |||||||||||||| ||| ||| |||||||||||  |||||||| | ||||||  ||||| |||||  ||||||||    | ||||||||||||||||||    
T  452551 gtcctcacactagtcgaacctccctcatacatattcttgatagccctaatataggcaatcctaacccctttcttctcccgggctttccacaaaatctctc 452650  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 240  Q
    | | |||| |||| |||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  452651 tcggtactctatcgtacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 452750  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  452751 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 452822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 8180140 - 8179869
Alignment:
Q  52 cctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctcta 150  Q
    |||||||||||| ||||||| ||| |||||||| |||||||| | |||||   ||||| |||||  ||||||||  |  ||||||||||||||||||||     
T  8180140 cctcacactagtcgaagctccctcgtacatatccttgatagccctaatattggcaatcctaacccctttcttctccagggctttccacaaaatctctctc 8180041  T
Q  151 gc--tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc--------agataagtagat 240  Q
     |  |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||        |  |||||||||    
T  8180040 tcggtactctatcatacgtcttttccaaatcaatgaaaaccaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcaaagtaagtagat 8179941  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       |||| |||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  8179940 --tgctttcatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 8179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 2609885 - 2609695
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccac 138  Q
    ||||||| | |||||||||||| | |||||||||||||||||||| |||||||| | ||||||  ||||| | |||  ||||||||    | ||||||||    
T  2609885 cccatcctgcgtcctcacactaatcgaagctctctcatacatatccttgatagccctaatataggcaatccttacccctttcttctccggggctttccac 2609786  T
Q  139 aaaatctctct-agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||||||||||| ||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  2609785 aaaatctctctcagc-actctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgatccatca 2609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 32 - 315
Target Start/End: Original strand, 24584523 - 24584812
Alignment:
Q  32 tcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attg 130  Q
    ||||| ||||||||| | ||| ||||| |||| ||||||| |||||||||||| ||||||||||  |||||  ||||| |||||  ||||||||  |  |    
T  24584523 tcggtagccccatcctgcgtcttcacagtagtcgaagctccctcatacatatccttgatagctctgatataggcaatcctaacccctttcttctccaggg 24584622  T
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca- 229  Q
     |||||||||||||||||| |  ||| ||||||||| ||||||||||||||||||||  | ||| ||||||||||||||| ||| |||||| |||||||     
T  24584623 ttttccacaaaatctctctggaaactctatcatacgccttctccaaatcaatgaaaattaggtgtaagtcttttttatccgtccgatatcgctccatcac 24584722  T
Q  230 -----ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
         ||  |||||||||  |||||||||| | |||||||| | ||||||||||||||  ||||||  ||| || |||||| |||||||||||    
T  24584723 gcgtcgaagtaagtagat--cgcttccatactcgacctccc-agacataaaaccaaatcagttatctataactcgagtctcctttcttagtct 24584812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 45368561 - 45368741
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaa-tctctc 148  Q
    ||||||||||||| ||||||| |||||||||||| | |||||||| ||||||  ||||| | |||   |||||||  |  ||||||||||||| ||||||    
T  45368561 tcctcacactagtcgaagctccctcatacatatcctggatagctctaatataggcaatcctcaccccattcttctccagggctttccacaaaaatctctc 45368660  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||| |||| ||||||||| |||||| |||||||||||||| ||||| ||||  ||||||||| ||| |||||| |||||||    
T  45368661 taggtactctatcatacgccttctcaaaatcaatgaaaactaagtgtaagttctttttatccgtccgatatcgctccatca 45368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 16292084 - 16291943
Alignment:
Q  26 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    ||||| ||||| | ||||||| |||||||||||||||| |||||||||||||||||||| |||||||  | ||||||  ||||| |||||  ||||||||    
T  16292084 aaattttcggtagtcccatcctgtgtcctcacactagtcgaagctctctcatacatatccttgatagtcctaatataggcaatcctaacccctttcttct 16291985  T
Q  126 -tattgctttccacaaaatctctctagctactttatcatacg 166  Q
      |    |||||||||||||||||| | |||| |||||||||    
T  16291984 ccaggattttccacaaaatctctctcgatactctatcatacg 16291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 39287849 - 39287923
Alignment:
Q  132 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 206  Q
    ||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||  ||||||| || |||||    
T  39287849 tttccactaaatctctctagccactttatcacatgtcttctccaaatcaatgaaaactgagtgcaaatccttttt 39287923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 6465024 - 6464948
Alignment:
Q  133 ttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 209  Q
    ||||||||||||| ||||  |||||||||||| ||||| ||||||||||||||||  |||||||| | |||||||||    
T  6465024 ttccacaaaatctatctatgtactttatcatatgtcttatccaaatcaatgaaaattaagtgcaatttttttttatc 6464948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 38453543 - 38453628
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    ||||||| | |||||||||||||| ||| |||||||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||    
T  38453543 cccatcctgcgtcctcacactagtcgaaactctctcatacatatccttgatagccctaatataggcaatcctaacccctttcttct 38453628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 37281451 - 37281388
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac 114  Q
    ||||||||||||||||||||| || ||||||||| ||||||| || ||||||| ||||| ||||    
T  37281451 tcctcacactagttgaagctcccttatacatatccttgatagttctaatataatcaatcctaac 37281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 23907237 - 23907508
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||| |||||| |||||  ||||||||  |  |||||||||||||||||||    
T  23907237 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatatagacaatcctaacccctttcttctccagggctttccacaaaatctctc 23907336  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 240  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | | |||||| |||||||      ||  |||||||||    
T  23907337 ttggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtcgaagtaagtagat 23907436  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       ||||||||||| |||||||| |  ||||||||||||||| ||||| |||| || |||||| |||||||||||    
T  23907437 --tgcttccatagtcgacctccc-aggcataaaaccaaattgattatccgtaactcgagtctcctttcttagtct 23907508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 50 - 315
Target Start/End: Complemental strand, 435579 - 435308
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  435579 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 435480  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 240  Q
    | | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| || ||||      ||  |||||||||    
T  435479 tcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctctatcacgcgtcgaagtaagtagat 435380  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       |||||||||||  ||||||| |  ||||||||||||||||||||| |||| || || ||| |||||||||||    
T  435379 --tgcttccatagtcaacctccc-aggcataaaaccaaattggttatccgtaactcgagcctcctttcttagtct 435308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 48623463 - 48623733
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 149  Q
    ||||||||||||| ||||||| ||| |||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||||||||||||||||||    
T  48623463 tcctcacactagtcgaagctccctcgtacatatctttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctct 48623562  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatc 241  Q
     | |||| ||||||||  ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||     
T  48623563 cggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtcctatatcgctccatcacgcgtcgaactaagtagat- 48623661  T
Q  242 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
      ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||  |||||||||||    
T  48623662 -tgcttccatagtcgacctccc-aggcataaaaccaaattggttatctgtaactcgagtcttctttcttagtct 48623733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 40 - 206
Target Start/End: Complemental strand, 53703967 - 53703800
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||| |  |||||||||    
T  53703967 cccatcctgtgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttcttcagggctttccac 53703868  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 206  Q
    ||||||||||| | ||||  |||||||| ||| ||||||||| ||||||| ||||||||||| |||||    
T  53703867 aaaatctctctcggtactcaatcatacgccttttccaaatcagtgaaaactaagtgcaagtccttttt 53703800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 55769294 - 55769486
Alignment:
Q  26 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    |||||||| ||||| |||||  | ||||||| |||||| ||||||| || |||||||||||||||||||| ||||||| ||||| ||| |  ||||||||    
T  55769294 aaattgtctgtggctccatcttgcgtcctcaaactagtcgaagctccct-atacatatcattgatagctctaatataagcaatcctaatccctttcttct 55769392  T
Q  126 -tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaata 218  Q
     ||  |||||||||||||||| |||||  ||| || |||||| ||| || |||||||||| || ||| ||||||||||||||||||||||||||    
T  55769393 ctagagctttccacaaaatctgtctaggcactctaccatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatccaata 55769486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 55833550 - 55833742
Alignment:
Q  26 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    |||||||| ||||| |||||  | ||||||| |||||| ||||||| || |||||||||||||||||||| ||||||| ||||| ||| |  ||||||||    
T  55833550 aaattgtctgtggctccatcttgcgtcctcaaactagtcgaagctccct-atacatatcattgatagctctaatataagcaatcctaatccctttcttct 55833648  T
Q  126 -tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaata 218  Q
     ||  |||||||||||||||| |||||  ||| || |||||| ||| || |||||||||| || ||| ||||||||||||||||||||||||||    
T  55833649 ctagagctttccacaaaatctgtctaggcactctaccatacgccttatcaaaatcaatgataatcaactgcaagtcttttttatccatccaata 55833742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 1777950 - 1778223
Alignment:
Q  50 gtcctcacactagttgaa-gctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctct 147  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| | ||||||  ||||  |||||  ||||||||  |  ||||||||||||||||||    
T  1777950 gtcctcacactagttgaaagctccctcatacatatcattgatagccctaatataggcaattctaacccctttcttctcaagggctttccacaaaatctct 1778049  T
Q  148 ctagctactttatcatacgtc-ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtag 238  Q
    || | |||| ||||||||  | || ||||||||||||||||| |||||||||| |||||||||| ||| |||||| ||||||| |        |||||||    
T  1778050 cttgatactctatcatacacctttttccaaatcaatgaaaactaagtgcaagttttttttatccgtccgatatcgctccatcacacgtcgaagtaagtag 1778149  T
Q  239 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||   |||||||||||  ||||||| |  ||||||| ||||||||||||| |||| || |||||| |||||||||||    
T  1778150 at--tgcttccatagtcaacctccc-aggcataaaatcaaattggttatccgtaactcgagtctcctttcttagtct 1778223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 39707810 - 39707650
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 149  Q
    |||||||| |||||  || ||| ||||||||| || |||||||||| ||||||  |||||  ||||  ||||||||    |  || ||||||| ||||||    
T  39707810 gtcctcacgctagtcaaaactccctcatacatttccttgatagctctaatataggcaatccaaacccctttcttctccaggactttcacaaaacctctct 39707711  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 210  Q
    ||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39707710 aggcactctatcatacgtcttctccaaatcaatgaaaactaagtgcaagtcttttttatcc 39707650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 27451112 - 27451288
Alignment:
Q  54 tcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagc 152  Q
    |||||||||| ||||||| ||||||||||||   |||||||| ||||||  ||||| | | |  ||||||||  |  | |||||||||||||||||||      
T  27451112 tcacactagtggaagctccctcatacatatcccagatagctctaatataggcaatcctcatccctttcttctccagggttttccacaaaatctctctaag 27451211  T
Q  153 tactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||| |||| |||| ||||||||||| | ||||||| || |||||||||||||||||| ||| |||||| |||||||    
T  27451212 tactctatcctacgccttctccaaataagtgaaaactaattgcaagtcttttttatccgtccgatatcgctccatca 27451288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 33369092 - 33369027
Alignment:
Q  146 ctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 211  Q
    ||||||| ||| |||||| | |||| ||||||||||||||||| ||||||||||||||||||||||    
T  33369092 ctctagcaactctatcatgcatcttttccaaatcaatgaaaactaagtgcaagtcttttttatcca 33369027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 44860435 - 44860318
Alignment:
Q  71 ctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtct 169  Q
    |||||||||||||| | |||||||| |||||| ||| || |||||  |||||||| ||  |||||||||||||||| |||||  |||  |||||||| ||    
T  44860435 ctctcatacatatcctagatagctcgaatatagacattcctaacccctttcttctctaaggctttccacaaaatctgtctaggcact--atcatacgcct 44860338  T
Q  170 tctccaaatcaatgaaaacc 189  Q
     |||||||||||||||||||    
T  44860337 cctccaaatcaatgaaaacc 44860318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 16002274 - 16002175
Alignment:
Q  129 tgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc 228  Q
    |||||||||||||||||||||||  ||||| ||||| | ||| || |||||||||||||| ||||| || | |||||||||| | |||||| ||| ||||    
T  16002274 tgctttccacaaaatctctctaggaactttttcatatgccttttc-aaatcaatgaaaactaagtgaaatttttttttatccgtgcaatattgttacatc 16002176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 41598214 - 41598166
Alignment:
Q  172 tccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatc 220  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  41598214 tccaaatcattgaaaactaagtgcaagtctcttttatccatccaatatc 41598166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 2296402 - 2296364
Alignment:
Q  168 cttctccaaatcaatgaaaaccaagtgcaagtctttttt 206  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2296402 cttctccaaatcaatgaaaactaagtgcaagtctttttt 2296364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 41005662 - 41005617
Alignment:
Q  75 catacatatcattgatagctccaatataaacaatcttaaccttttt 120  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  41005662 catacatatcattgataactcaaatataagcaatcttaaccttttt 41005617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 2e-45; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 43241316 - 43241587
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  43241316 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagagctttccacaaaatctctc 43241415  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 240  Q
    | | |||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |||||||||    
T  43241416 tcggtactctatcatacgtcttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagtaagtagat 43241515  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  43241516 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtct 43241587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 8671278 - 8671085
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatctt---aacctttttcttctt-attgctttc 135  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | |||||| |||||  |   ||||  ||||||||  | |||||||    
T  8671278 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatatagacaattattctaacccctttcttctccagtgctttc 8671179  T
Q  136 cacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  8671178 cacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 8671085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 51441699 - 51441970
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||| | ||||||| |||||||||||| |||||||| | ||||||  ||||  |||||  ||||||||  |  |||||||||||||||||||    
T  51441699 gtcctcacactaatcgaagctccctcatacatatccttgatagccctaatataggcaattctaacccatttcttctccagggctttccacaaaatctctc 51441798  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagat 240  Q
      | |||| |||||||||  || ||||||||||||||||| ||||||||||||||||||||| ||  |||||  |||||||      ||  |||||||||    
T  51441799 acgatactctatcatacgctttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtctgatatcactccatcacgcgtcgatgtaagtagat 51441898  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  51441899 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 51441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 49348329 - 49348608
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| ||||| |||||||||  |  |||||||||||||||||||    
T  49348329 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccttttcttctccagggctttccacaaaatctctc 49348428  T
Q  149 tagctactttatcat--------acgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--t 232  Q
    | | |||| ||||||        ||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||  |    
T  49348429 tcggtactctatcatactatcacacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaagt 49348528  T
Q  233 aagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||||||||   ||||||||||| |||||||| |  |||||||||||||||||||||  ||| || |||||  |||||||||||    
T  49348529 aagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccataactcgagtcttctttcttagtct 49348608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 32 - 313
Target Start/End: Original strand, 29173446 - 29173733
Alignment:
Q  32 tcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattg 130  Q
    ||||| ||||||||  | |||||||||||||| ||| ||  | ||| ||||||||||||||||| ||||||  ||||| |||||  | |||||| ||       
T  29173446 tcggtagccccatcatgcgtcctcacactagtcgaaacttccccatgcatatcattgatagctctaatataggcaatcctaacccctctcttctctaggc 29173545  T
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcag 230  Q
    |||||||||||| |||||| |  ||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| ||  |||||| |||||||     
T  29173546 ctttccacaaaacctctctcggcactctatcatacgccttctccaaatcaataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcac 29173645  T
Q  231 a--------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagt 313  Q
    |        |||||| ||   ||||||||||| ||||||| |   |||||||||||||| |||||| |||| || ||||||||||||||||    
T  29173646 acgtcgaagtaagtaaatt--gcttccatagtcgacctcctagg-cataaaaccaaattagttatccgtaactcgagtctcttttcttagt 29173733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 32405400 - 32405558
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 149  Q
    |||||| ||||||  |||||| | | ||| |||| || ||||||| ||||||| ||||  |||||  |||||||| ||| ||||||||||||||||||||    
T  32405400 tcctcaaactagtcaaagctcccgcgtacgtatcctttatagctctaatataagcaattctaacccctttcttctctatggctttccacaaaatctctct 32405499  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 209  Q
    ||  ||| ||||||||| ||| ||||||||||||||||| |||||||  |||||||||||    
T  32405500 agacactctatcatacg-cttttccaaatcaatgaaaactaagtgcacatcttttttatc 32405558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 50 - 208
Target Start/End: Original strand, 34828020 - 34828179
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 148  Q
    |||||||||||||| || || | |||||||||||| | ||||| || ||||||| ||||| |||||| |||||||| ||   |||||||||||||||||     
T  34828020 gtcctcacactagtggaggccccctcatacatatcttggatagatcgaatataagcaatcctaacctctttcttctctaggactttccacaaaatctctt 34828119  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 208  Q
    |||  ||| ||||||||   |||| ||||||||||||||| |||||| |||| |||||||    
T  34828120 tagacactatatcatacacattcttcaaatcaatgaaaactaagtgcgagtcatttttat 34828179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 45833907 - 45833727
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaac--ctttttcttcttattgctttccacaaaatctct 147  Q
    ||||||||| |||| ||||||| |||||| ||||| |||||| ||| | ||||||||||| ||||  ||||||  |||||  |||||||||||||| |||    
T  45833907 gtcctcacattagtcgaagctccctcatatatatctttgataactctagtataaacaatcctaacatcttttttctcttag-gctttccacaaaatatct 45833809  T
Q  148 ctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||||  ||| |||| |||| ||||| ||||||||||||||| |  | ||| ||||||||||   |||||||||  |||||||    
T  45833808 ctagacactctatcgtacgccttcttcaaatcaatgaaaactatatacaaatcttttttatttgtccaatatcactccatca 45833727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 35829304 - 35829506
Alignment:
Q  26 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    |||| ||||| | |||||||  |||| ||||||||||||||||  | ||||| |||||  |||||||||| || |||| ||||| ||||   |||||| |    
T  35829304 aaatcgtcggcgaccccatcttgtgtactcacactagttgaagtcccctcatgcatatatttgatagctcgaacataagcaatcataactcatttctttt 35829403  T
Q  126 -tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttc 224  Q
     ||  |||||||| |||| ||||||||  |||  || ||| | ||||||||||||||||||||| ||||| |  ||||||||||   |||||||| ||||    
T  35829404 ctagggctttccaaaaaacctctctaggcact--attataagccttctccaaatcaatgaaaactaagtgtatatcttttttatttgtccaatattgttc 35829501  T
Q  225 catca 229  Q
    |||||    
T  35829502 catca 35829506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 37463798 - 37463872
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct 125  Q
    ||||||||||||||| ||||| |||||||| ||| |||||||||| | ||||| ||||| |||||  ||||||||    
T  37463798 tcctcacactagttgcagctccctcatacacatccttgatagctctagtataagcaatcctaacccctttcttct 37463872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 7813840 - 7813732
Alignment:
Q  53 ctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctctag 151  Q
    |||| |||||| ||||||||||||||||| || |||||| ||| ||||||| || || ||||   |||||||| || || |||||| |||||||||||||    
T  7813840 ctcatactagtcgaagctctctcatacatgtccttgataactctaatataagcagtcgtaacacatttcttctctagtgttttccataaaatctctctag 7813741  T
Q  152 ctactttat 160  Q
      |||||||    
T  7813740 acactttat 7813732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 11681945 - 11681897
Alignment:
Q  267 acataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    |||||||||||| ||| ||||| |||| |||||||||||||||||||||    
T  11681945 acataaaaccaatttgattatcggtaactcaagtctcttttcttagtct 11681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 4e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 33350731 - 33351012
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | ||| |||||||||| |||||||||||||||||||| |||||||| | ||||||  ||||| ||||| |||||||||  |  |||||||||    
T  33350731 cccatcctgcgtcttcacactagtcgaagctctctcatacatatccttgatagccctaatataggcaatcctaacccttttcttctccagggctttccac 33350830  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
    ||||||||||| | |||| ||||||||  ||| |||||||||| |||||| ||||||||||||||||||||| ||| |||||| |||||||      ||     
T  33350831 aaaatctctctcggtactctatcataccccttttccaaatcaaagaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgttgaa 33350930  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||   ||||||||||| |||||||| || ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  33350931 gtaagtagat--tgcttccatagtcgacctccc-aagcataaaaccaaattggttatccgtaactagagtctcctttcttagtct 33351012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 36651351 - 36651070
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||| ||| |||||||||||| |||||||| | ||||||  ||||| |||||  || |||||  |  |||||||||    
T  36651351 cccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagccctaatataggcaatcctaaccccttacttctccagggctttccac 36651252  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
     |||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||     
T  36651251 gaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaa 36651152  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||   ||||||||| | |||||||| | |||||||||||||||||||||| |||| || |||||| |||||||||||    
T  36651151 gtaagtagat--tgcttccataatcgacctccc-agacataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 36651070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 39907315 - 39907585
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 149  Q
    ||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||||||||||||||||||    
T  39907315 tcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctct 39907414  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtagatc 241  Q
     | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||      ||  |||||||||     
T  39907415 cggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatcacgcgtcgaagtaagtagat- 39907513  T
Q  242 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
      ||||||| ||| |||||||| |  ||||||||||||||||||||| |||| ||  ||||| |||||||||||    
T  39907514 -tgcttccacagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgggtctcctttcttagtct 39907585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 40 - 229
Target Start/End: Original strand, 46356776 - 46356966
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||  |||||  ||||||||  |  |||||||||    
T  46356776 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaattctaacccctttcttctccagggctttccac 46356875  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | ||| |||||| |||||||    
T  46356876 aaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttattcgtccgatatcgctccatca 46356966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 39 - 315
Target Start/End: Complemental strand, 32629966 - 32629688
Alignment:
Q  39 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttcca 137  Q
    |||||||| | ||||||||||  || ||||||| |||||||||||| | |||||||  ||||||  ||||| | |||  ||||||||| |  ||||||||    
T  32629966 ccccatcctgcgtcctcacacaggtcgaagctccctcatacatatcctggatagctttaatataggcaatcctcacccctttcttcttcagggctttcca 32629867  T
Q  138 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca----gata 233  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||  |||||||       |    
T  32629866 caaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatctctccatcacgcgtcga 32629767  T
Q  234 agtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    |||||||  |||||||||||| ||||| || |  |||||| |||||||||||||| ||||    ||||||||||||||||||    
T  32629766 agtagat--cgcttccatagtcgaccttcc-aggcataaagccaaattggttatccgtaacgtgagtctcttttcttagtct 32629688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 38606395 - 38606206
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| | |||||||| ||||||  ||||| | | |  ||||||||  |  |||||||||    
T  38606395 cccatcctgcgtcctcacactagtcgaagctccctcatacatatcttggatagctctaatataggcaatcctcatccctttcttctccagggctttccac 38606296  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||||||||| || ||||  |||||||| |||||| |||||||||||||| ||||| ||||||||||||||| ||| |||||| |||||||    
T  38606295 aaaatctctccaggtactc-atcatacgccttctcaaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatca 38606206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 130 - 315
Target Start/End: Complemental strand, 22346778 - 22346588
Alignment:
Q  130 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||||||||||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| | | |||||| |||||||    
T  22346778 gctttccacaaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatca 22346679  T
Q  230 ------ga--taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
          ||  |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| | || || |||||| |||||||||||    
T  22346678 cgtgtcgaagtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgaaactcgagtctcctttcttagtct 22346588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 36870260 - 36870419
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 149  Q
    ||||||||||||||||||||| |||||||||||| |||||  ||| ||||||  ||||| |||||  ||| || |  |  ||||||||||||||||||||    
T  36870260 tcctcacactagttgaagctccctcatacatatccttgatgactctaatataggcaatcctaacccctttattttccagggctttccacaaaatctctct 36870359  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatc 209  Q
    ||  ||| ||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  36870360 aggcactctatcatacgccttctccaaatcaatgaaaattaagtgcaagtattttttatc 36870419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 130 - 315
Target Start/End: Complemental strand, 38896883 - 38896693
Alignment:
Q  130 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccat-- 227  Q
    |||||||||||||||||||| | |||| ||||||||  ||| ||||||| ||||||||| ||||||||||||||||||||| ||| |||||| |||||      
T  38896883 gctttccacaaaatctctctcggtactctatcatacaccttttccaaattaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccattg 38896784  T
Q  228 ------cagataagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
           |  |||||||||   |||||||||||||||||||| |  ||||||||| ||||||||||| |||| || |||||| |||||||||||    
T  38896783 tgcgtcgaagtaagtagat--tgcttccatagttgacctccc-aggcataaaaccgaattggttatccgtaactcgagtctcctttcttagtct 38896693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 11593300 - 11593154
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  ||||  |||||||||||||    
T  11593300 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggcttgtcacaaaatctctc 11593201  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgc 195  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||    
T  11593200 tcggtactctatcatacgccttttccaaatcaatgaaaactaagtgc 11593154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 24178119 - 24178310
Alignment:
Q  39 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttcca 137  Q
    |||||||| | |||||||| ||||| ||||||| |||||||| ||| |||||||||  ||| ||  ||||| |||||  ||||||||  |  ||||||||    
T  24178119 ccccatccggcgtcctcaccctagtcgaagctccctcatacacatccttgatagctttaatttaggcaatcctaacccctttcttctccagggctttcca 24178218  T
Q  138 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||||||||||||| |||| | ||||||  | ||||||||||||||||||| || || ||  ||||| ||||| |||  ||||| |||||||    
T  24178219 caaaatctctctaggtactctgtcatacaccgtctccaaatcaatgaaaactaattgtaacccttttgtatccgtccggtatcgctccatca 24178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Original strand, 33738342 - 33738425
Alignment:
Q  130 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 213  Q
    |||||||||||||||| |||||| |||||||| || |  || ||||||||||||||||  ||||||||||||||||||||||||    
T  33738342 gctttccacaaaatctttctagccactttatcgtatgcattttccaaatcaatgaaaattaagtgcaagtcttttttatccatc 33738425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 32483737 - 32483656
Alignment:
Q  132 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 213  Q
    |||||||||||||||||| | |  |||||| || ||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  32483737 tttccacaaaatctctcttggtgatttatcgtatgtcttctacaaatcaatgaaaattaagtgcaagtcttttttatccatc 32483656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 48055743 - 48055913
Alignment:
Q  41 ccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccaca 139  Q
    |||||| |||||||||||||||||||  ||| || ||| ||||| || ||||||| ||||||  || || |||||  |||||||| ||  | ||||||      
T  48055743 ccatcctgtgtcctcacactagttgagactcccttatagatatccttcatagctcgaatataggca-tcctaacccctttcttctctagggatttccatg 48055841  T
Q  140 aaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcca 211  Q
    |||||||| |||  ||| ||||| ||| ||||||| ||||||||||||| ||||||||||| |||| |||||    
T  48055842 aaatctctttaggcactctatcacacgccttctccgaatcaatgaaaactaagtgcaagtcgttttaatcca 48055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 17101504 - 17101588
Alignment:
Q  136 cacaaaatctctctagcta-ctttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatat 219  Q
    |||||||| |||||||| | || ||||| ||||  |||||||||| |||||||| |||| |||||||||||||||||||| ||||    
T  17101504 cacaaaatttctctagccatctctatcacacgtaatctccaaatcgatgaaaactaagtacaagtcttttttatccatccgatat 17101588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 11592835 - 11592765
Alignment:
Q  244 gcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  11592835 gcttccatagtcgacctcc-aagccataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 11592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 49028628 - 49028563
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacc 115  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||    
T  49028628 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacc 49028563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 21520321 - 21520402
Alignment:
Q  102 aaacaatcttaacctttttcttct-tattgctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaat 182  Q
    |||||||| |||| |||||||||| ||  ||||||||| | |||||||||   | |||||||||| ||||||||||||||||    
T  21520321 aaacaatcataacatttttcttctctagggctttccacgatatctctctaaacattttatcatacatcttctccaaatcaat 21520402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 5e-40; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 36566176 - 36566356
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  36566176 gtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 36566275  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    | | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  36566276 tcgatactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatca 36566356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 573 - 851
Target Start/End: Complemental strand, 7166869 - 7166591
Alignment:
Q  573 aaggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaa 672  Q
    ||||| ||||| |||||||||  ||||||||||||  ||  ||||  ||||||||||||   |||   ||||||||  ||| || |||||||| ||||||    
T  7166869 aaggagtgaagctgaactagtgcagcaaattgttgaggatcttttggcaaaactagacaacgcatccttgtctattatcgaatttccagttggattggaa 7166770  T
Q  673 cctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacag 772  Q
     ||||  |||| ||||||   || ||||||| ||  ||  ||||||| ||||||||||||||||| |||||||||||  | || ||||||||||||||||    
T  7166769 tctcgcatgcacaaagttattgaatttattgcaactcagccaagcaaagtttgtatgatagggatatggggaatgggcaggtcgggtaaaacaaccacag 7166670  T
Q  773 ccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa 851  Q
    ||||| |||||||||||| |||||||||||| ||| || ||||||||||| |||||||  | |||||||  ||||||||    
T  7166669 ccaaagccatctataatcaaattcatcgcaaatttttgaatagaagtttcattgaaaacgttagagaagtatgtgaaaa 7166591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 50 - 221
Target Start/End: Original strand, 15216207 - 15216378
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccacaaaatctctct 149  Q
    |||||||||||||| ||||||| |||||| ||||||| |||||||| ||||||  ||||| |  ||  |||||||| || | |||||||||||||| |||    
T  15216207 gtcctcacactagtcgaagctccctcatatatatcatagatagctctaatataggcaatcctcgcccctttcttctcatggatttccacaaaatctatct 15216306  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 221  Q
    || |||| ||||||||| ||| | ||||||||||||||| || || ||||||||||||||||| | ||||||    
T  15216307 aggtactctatcatacgccttattcaaatcaatgaaaactaaatgtaagtcttttttatccattcgatatcg 15216378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 42854948 - 42855221
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| ||||||||||||   |||||||| ||| ||  ||||| | |||  ||||||||    | ||||||||||||| ||||    
T  42854948 gtcctcacactagtcgaagctccctcatacatatcccggatagctctaatttaggcaatcctcacccctttcttctacgaggctttccacaaaatatctc 42855047  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtc--ttttttatccatccaatatcgttccatca------ga--taagtag 238  Q
    |||  ||| ||||||| | ||||||||||||||||||||| ||||| |||||  |||||||||| |||||||||| |||||||      ||  |||||||    
T  42855048 taggcactctatcatatgccttctccaaatcaatgaaaactaagtgtaagtcttttttttatccgtccaatatcgctccatcacgcgtcgaagtaagtag 42855147  T
Q  239 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||  |||||| ||||| |||||||| |  ||||||||||||||||||||| ||||  | ||||||||||||||||||    
T  42855148 at--cgcttcaatagtcgacctccc-aggcataaaaccaaattggttatccgtaacgcgagtctcttttcttagtct 42855221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 695 - 851
Target Start/End: Complemental strand, 3269267 - 3269111
Alignment:
Q  695 agtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaat 794  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||| |   ||||| ||   |||    
T  3269267 agtttattgaaaaacaatcaagcaaagtttgcatgatagggatctggggtatgggtggatcaggtaaaacaacaacagccagagatatctacaacaaaat 3269168  T
Q  795 tcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaaa 851  Q
    ||||||||| |||||  ||   |||||| |||||||||| ||||||| || ||||||    
T  3269167 tcatcgcaaatttgtagatcacagtttcattgaaaatattagagaagtttatgaaaa 3269111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 36544509 - 36544228
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct-taacctttttcttctt-attgctttcca 137  Q
    ||||||| | |||||||||||||| ||||||| |||||| ||||| |||||||| | ||||||  |||  | |||||  ||||||||  |  ||||||||    
T  36544509 cccatcctgcgtcctcacactagtcgaagctccctcatatatatccttgatagccctaatataggcaaattctaacccctttcttctccagggctttcca 36544410  T
Q  138 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga 231  Q
    |||||||| ||| | |||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||||| ||  |||||| || ||||      ||    
T  36544409 caaaatctatctcggtactctatcatacgcctt-tccaaatcaatgaaaactaagtgcaaatcttttttatccgtcagatatcgctcaatcacgcgtcga 36544311  T
Q  232 --taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
      |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| |||| |  |||||| |||||||||||    
T  36544310 agtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaacttgagtctcctttcttagtct 36544228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 662 - 881
Target Start/End: Original strand, 31173812 - 31174031
Alignment:
Q  662 ttgggttggaacctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaa 761  Q
    |||| |||||| | |||||||||||| || || |||||||||| || || |||| ||| || || ||||||||||| ||||||||||||||||| || ||    
T  31173812 ttggattggaatcccgtgtgcaaaaaattaccaagtttattgataatcaatcaaacaaagtctgcatgatagggatatggggaatgggtggatccgggaa 31173911  T
Q  762 aacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatag---aagtttcgttgaaaatatcagagaagcttgtgaaaatgataat 858  Q
    |||||||||||||||| | ||||| |||  ||| ||||| | |||||    |||   ||||||| |||||| |||  |||||| |||||   || |||||    
T  31173912 aacaaccacagccaaagctatctacaataaaatccatcgtaggtttgaaggtagaacaagtttctttgaaagtattcgagaagtttgtg---ataataat 31174008  T
Q  859 tatagaggggttattcatttaca 881  Q
    | |||||||||||||||||||||    
T  31174009 tctagaggggttattcatttaca 31174031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 715 - 851
Target Start/End: Complemental strand, 3264589 - 3264453
Alignment:
Q  715 agcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcata 814  Q
    ||||| ||||||||||| || || |||||||||||||| |  ||||||||||||||||||||| || |||| || | ||| |||||||| |||| | |||    
T  3264589 agcaaagtttgtatgatgggaatatggggaatgggtgggttgggtaaaacaaccacagccaaagccgtctacaaccaaatccatcgcaaatttgaggata 3264490  T
Q  815 gaagtttcgttgaaaatatcagagaagcttgtgaaaa 851  Q
     ||||||| | |||||||| ||||||| || ||||||    
T  3264489 aaagtttcatcgaaaatattagagaagtttatgaaaa 3264453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 695 - 846
Target Start/End: Complemental strand, 3288535 - 3288384
Alignment:
Q  695 agtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaat 794  Q
    |||||||| |||| || |||||||| |||||| ||| ||||||||||||||||||||| || || |||||||| ||||||||| | ||||  |||| |||    
T  3288535 agtttattcaaaatcaatcaagcaaagtttgtttgacagggatctggggaatgggtgggtcggggaaaacaacaacagccaaagctatcttcaatcaaat 3288436  T
Q  795 tcatcgcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgt 846  Q
    | ||   || ||| |||||  ||||||| |||||||||| ||||||| ||||    
T  3288435 taatttgaaatttatgcatgcaagtttcattgaaaatattagagaagtttgt 3288384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 577 - 790
Target Start/End: Complemental strand, 3400821 - 3400608
Alignment:
Q  577 aatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaacctc 676  Q
    ||||||||||||||||| |||||||||||||  |||  |||  |||||||||| |  |||||  |||||||| | || |  || ||||| |||||  | |    
T  3400821 aatgaaggtgaactagtgaagcaaattgttgaggacactttggcaaaactagatatctcattgttgtctattactgaatatccggttggattggattccc 3400722  T
Q  677 gtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaa 776  Q
    |||||||| || || || ||||||||||  | || ||||   | || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||    
T  3400721 gtgtgcaacaaattaccaagtttattgatcatcaatcaacagaagtctgtatgatagggatatggggaatgggtggatccgggaaaacaaccacggccaa 3400622  T
Q  777 atccatctataatc 790  Q
    | | ||||| ||||    
T  3400621 agctatctacaatc 3400608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 697 - 775
Target Start/End: Original strand, 13806935 - 13807013
Alignment:
Q  697 tttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagcca 775  Q
    |||||| |||| || |||||||| |||||  |||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  13806935 tttattaaaaatcaatcaagcaaagtttgcttgatagggatctgggggatgggtggatcaggtaaaacaacaacagcca 13807013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 698 - 795
Target Start/End: Original strand, 13785638 - 13785735
Alignment:
Q  698 ttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaatt 795  Q
    |||||||||| || |||| |||||||||    || ||||||||||| ||||||||||| || |||||||||||||||||| ||||||| |||| ||||    
T  13785638 ttattgaaaatcaatcaaacaatgtttgctctatggggatctggggtatgggtggatcggggaaaacaaccacagccaaagccatctacaatcaaatt 13785735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 700 - 800
Target Start/End: Complemental strand, 3409395 - 3409295
Alignment:
Q  700 attgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatc 799  Q
    ||||| ||||||||  || ||||||||||| ||||||||||||| ||||| ||||| |||||||||||   ||||||| ||||||| |||  ||||||||    
T  3409395 attgagaaacattcgggcgatgtttgtatggtagggatctggggcatgggaggatcaggtaaaacaactgtagccaaagccatctacaatgaaattcatc 3409296  T
Q  800 g 800  Q
    |    
T  3409295 g 3409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 6184887 - 6184827
Alignment:
Q  169 ttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    |||||||||||||||||||| ||||| ||||||||||||||  ||| |||||| |||||||    
T  6184887 ttctccaaatcaatgaaaactaagtgtaagtcttttttatctgtccgatatcgctccatca 6184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 11130955 - 11131029
Alignment:
Q  132 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 206  Q
    ||||||||||||||||||    ||||||||||||| ||| ||||||||||||||||| |  ||||||| ||||||    
T  11130955 tttccacaaaatctctctgaaaactttatcatacgccttatccaaatcaatgaaaactagatgcaagtatttttt 11131029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 25984788 - 25984734
Alignment:
Q  158 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 212  Q
    ||||||| | |||||||||||||||| |||||||||||||||| |||| ||||||    
T  25984788 tatcatatgccttctccaaatcaatggaaaccaagtgcaagtccttttgatccat 25984734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 319
Target Start/End: Original strand, 41445401 - 41445452
Alignment:
Q  268 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtctccat 319  Q
    ||||||||||||||||||| | |||| || ||| ||||||||||||||||||    
T  41445401 cataaaaccaaattggttagccgtaactcgagtgtcttttcttagtctccat 41445452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 30825 - 30544
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  |||||||||    |||||||||    
T  30825 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttcttcggggctttccac 30726  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
    ||||||||||| | |||| ||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||| ||  |||||| | |||||      ||     
T  30725 aaaatctctctcggtactctatcatacgccttttccaattcaatgaaaactaagtgcaagtcttttttatccgtctgatatcgcttcatcacgcgttgaa 30626  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  30625 gtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 30544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 9e-39; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 40 - 229
Target Start/End: Complemental strand, 52138185 - 52137995
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||  ||||||||  |  |||||||||    
T  52138185 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccac 52138086  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||  ||| |||||| |||||||    
T  52138085 aaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatctgtccgatatcgctccatca 52137995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 40 - 315
Target Start/End: Original strand, 51448634 - 51448915
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccac 138  Q
    ||||||| | |||||||||| ||| ||||||| |||||||||||| |||||||| | ||||||  ||| | |||||  ||||||||    | ||||||||    
T  51448634 cccatcctgcgtcctcacaccagtcgaagctccctcatacatatccttgatagccctaatataggcaaacctaacccctttcttctcccgggctttccac 51448733  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
    ||||||||||| | |||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||     
T  51448734 aaaatctctctcggtactctatcatacgccttttccaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcacgcgtcgaa 51448833  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     ||| |||||   ||||||||||| |||||||| |   |||||||||||||||||||| |||| || |||||| |||||||||||    
T  51448834 gtaaatagat--tgcttccatagtcgacctccc-aggtataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 51448915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 721 - 858
Target Start/End: Complemental strand, 32413020 - 32412883
Alignment:
Q  721 gtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtt 820  Q
    ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||||||| |||  ||||||| ||||   ||||||| |    
T  32413020 gtttgcatgatagggatttggggaatggggggatcaggtaaaacaaccacagcaaaagccatctataatcaaatcaatcgcaaatttgcagatagaagct 32412921  T
Q  821 tcgttgaaaatatcagagaagcttgtgaaaatgataat 858  Q
    || ||||||| || ||||||   |||||||| ||||||    
T  32412920 tcattgaaaacattagagaaatctgtgaaaaggataat 32412883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 9258244 - 9258095
Alignment:
Q  39 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttcttattgctttccac 138  Q
    |||||||  ||||||||||| |||| |||||||||||||||||||| || ||||||| |||||| |||||| ||||| |||  |    |  ||||||||     
T  9258244 ccccatcatgtgtcctcacaatagtcgaagctctctcatacatatcgtttatagctctaatatagacaatcctaaccctttattatccagagctttccat 9258145  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaac 188  Q
    |||||||||||||  | ||||||||| |  ||||||||||||||||||||    
T  9258144 aaaatctctctaggaattttatcatatgcgttctccaaatcaatgaaaac 9258095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 731 - 833
Target Start/End: Complemental strand, 6907891 - 6907789
Alignment:
Q  731 tagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgcatagaagtttcgttgaaaa 830  Q
    ||||||| ||||||||||| || |  |||||||| ||||||||||||  |||||| |||  |||||||||||| |||||||||||||||||| |||| ||    
T  6907891 tagggatttggggaatgggcgggttgggtaaaactaccacagccaaaggcatctacaataaaattcatcgcaaatttgtgcatagaagtttcattgagaa 6907792  T
Q  831 tat 833  Q
    |||    
T  6907791 tat 6907789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 38849441 - 38849288
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||  ||||| |||||  |||||||| ||  ||||        |||||||    
T  38849441 gtcctcacactagtcgaagctccctcatacatatccttgatagctctaatataggcaatcataacccctttcttctatagggctt--------atctctc 38849350  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatcc 210  Q
    ||   ||| |||| |||| ||||||||||||||||||||| ||||| |||| ||||||||||    
T  38849349 tacaaactctatcttacgccttctccaaatcaatgaaaactaagtgtaagtgttttttatcc 38849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 48221047 - 48220971
Alignment:
Q  130 gctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttt 206  Q
    |||||||| ||||| |||||||  | | |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  48221047 gctttccataaaatatctctaggcaatctatcatacgttttctccaaatcaatgaaaactaagtgcaagtctttttt 48220971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 50630373 - 50630418
Alignment:
Q  168 cttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatc 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  50630373 cttctccaaatcaatgaaaactaagtgcaagtcttttttatccatc 50630418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 19736569 - 19736502
Alignment:
Q  43 atcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 110  Q
    |||| ||||||||| |||||| ||||||| |||||||||||| |||||||||| || |||||||||||    
T  19736569 atcctgtgtcctcatactagtcgaagctccctcatacatatccttgatagctctaacataaacaatct 19736502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 19757387 - 19757320
Alignment:
Q  43 atcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatct 110  Q
    |||| ||||||||| |||||| ||||||| ||| |||||||| |||||||||| || |||||||||||    
T  19757387 atcctgtgtcctcatactagtcgaagctccctcgtacatatccttgatagctctaacataaacaatct 19757320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 3e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 5260184 - 5260454
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctct 149  Q
    ||||||||||||||||||||| |||||||||||| |  ||||||| ||||||| ||||| | |||  |||||| | ||  ||||||||| ||||||||||    
T  5260184 tcctcacactagttgaagctccctcatacatatcctatatagctctaatataagcaatcatcacccctttcttttctagggctttccactaaatctctct 5260283  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcag--------ataagtagatc 241  Q
    || |||| ||||||||| |||||||||||| |||||||| ||||| ||||||||||||||| ||| |||||| ||||||||        ||||  ||||     
T  5260284 aggtactctatcatacgccttctccaaatcgatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatcaggcgtcgaaataaagagat- 5260382  T
Q  242 acgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||| | |||||||| | |||||||||||||||||||||| ||||    |||||||||||| |||||    
T  5260383 -cgcttccataatcgacctccc-atacataaaaccaaattggttatccgtaacgtgagtctcttttctaagtct 5260454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 9706122 - 9705943
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| | || ||||| ||| ||  ||||| | |||  ||||||||  |  |||||||||||||||||||    
T  9706122 gtcctcacactagtcgaagctccctcatacatatcctggaaagctctaatttaggcaatcctcacccctttcttctacagggctttccacaaaatctctc 9706023  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc 228  Q
    ||| |||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||| ||||||    
T  9706022 taggtactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgatatcgctccatc 9705943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 6082747 - 6082575
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| ||||||| || ||||||  ||||| |||||  ||||||||  |  |||||||||||||||||||    
T  6082747 gtcctcacactagtcgaagctccctcatacatatccttgatagttctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctc 6082648  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcg 221  Q
    | | |||| ||||||||  ||| ||||||||||||||||| ||||||||||| ||||||||| ||| ||||||    
T  6082647 tcggtactctatcatacaccttttccaaatcaatgaaaactaagtgcaagtcctttttatccgtccgatatcg 6082575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 20428573 - 20428752
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 149  Q
    ||||||||||||| ||||||| | |||||||||| | |||||||| ||||||  ||||| | |||  ||||||||  |  ||||||||||||||||||||    
T  20428573 tcctcacactagtcgaagctcccacatacatatcctggatagctctaatataggcaatcctcacccctttcttctccagggctttccacaaaatctctct 20428672  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    || |||| ||||||||| ||||| ||||||||||||||| | ||| ||||||||||||||| ||| |||||| |||||||    
T  20428673 aggtactctatcatacgccttctacaaatcaatgaaaactaggtgtaagtcttttttatccgtccgatatcgctccatca 20428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 30670234 - 30670061
Alignment:
Q  51 tcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctct 149  Q
    |||||||||||||  || ||| || ||||||||| | |||||||| ||||||  |||||||||||| ||||||||| |   |||||||||||||||||||    
T  30670234 tcctcacactagtcaaaactcccttatacatatcctggatagctctaatataggcaatcttaacctctttcttcttcaggactttccacaaaatctctct 30670135  T
Q  150 agctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    ||      ||||| ||| ||||||||||||||||||||| ||||| ||||||||||| ||  ||| |||||| |||||||    
T  30670134 ag------tatcaaacgccttctccaaatcaatgaaaactaagtgtaagtcttttttctctgtccgatatcgctccatca 30670061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 132 - 311
Target Start/End: Complemental strand, 3629530 - 3629346
Alignment:
Q  132 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga 231  Q
    |||||||||||||||  ||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||| |   ||| |||||| ||||||| |    
T  3629530 tttccacaaaatctccataggtactttatcatacgccttcttcaaatcaatgaaaactaagtgtaagtcttttttgtttgtccgatatcgctccatcata 3629431  T
Q  232 --------taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 311  Q
            |||||||||||   |||||| || ||||| ||||| ||||||| ||||||| ||||| |||| || ||||||||||||||    
T  3629430 cgccgaagtaagtagatca--tttccattgtcgacct-ccaaagcataaaatcaaattgattatccgtaactcgagtctcttttctta 3629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 2681480 - 2681529
Alignment:
Q  158 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctttttta 207  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||    
T  2681480 tatcatacgccttctccaaatcaatgaaaactaagtgcaagtatttttta 2681529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 2208419 - 2208496
Alignment:
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 208  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  2208419 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 2208496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 2680958 - 2681027
Alignment:
Q  26 aaattgtcggtggccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctc 95  Q
    ||||| ||||| ||||||||| |||| ||||||||||| |||||||  |||| |||||| ||||||||||    
T  2680958 aaattttcggtagccccatcctgtgttctcacactagtcgaagctccttcatgcatatccttgatagctc 2681027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 5e-37; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 24177881 - 24177600
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||||| ||||||  ||||  |||||  ||||||||  |  |||||||||    
T  24177881 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagctctaatataggcaatgctaacccctttcttctccagggctttccac 24177782  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
    ||||||||||| | |||| ||||||| | ||| | ||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||      ||     
T  24177781 aaaatctctctcggtactctatcatatgcctttttcaaatcaatgaaaactaagtgcaagtcttttttatccgtccgatatcgctccatcatgcgtcgaa 24177682  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||   |||||| |||| ||||| || |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  24177681 gtaagtagat--tgcttccgtagtcgaccttcc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 24177600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 40 - 315
Target Start/End: Complemental strand, 20318348 - 20318067
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccac 138  Q
    ||||||| | |||||||||||||| ||| ||| |||||||||||| ||||||||   ||||||  ||||| |||||  ||||||||  |  |||||||||    
T  20318348 cccatcctgcgtcctcacactagtcgaaactccctcatacatatccttgatagccataatataggcaatcctaacccctttcttctccagggctttccac 20318249  T
Q  139 aaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga- 231  Q
    ||||||||||  | |||| ||||||||| ||| ||||||| ||||||||| ||||||||||||| ||||||| ||| |||||| |||||||      ||     
T  20318248 aaaatctctcccggtactctatcatacgccttttccaaattaatgaaaactaagtgcaagtcttatttatccgtccgatatcgctccatcacgcgtcgaa 20318149  T
Q  232 -taagtagatcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
     |||||||||   ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  20318148 gtaagtagat--tgcttccatagtcgacctccc-aggcataaaaccaaattggttatctgtaactcgagtctcctttcttagtct 20318067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 50 - 315
Target Start/End: Original strand, 2076409 - 2076680
Alignment:
Q  50 gtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttccacaaaatctctc 148  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||    |||||  ||||| |||||  ||  |||| ||  |||| ||||||||||||||    
T  2076409 gtcctcacactagtcgaagctccctcatacatatccttgatagccatgatataggcaatcctaaccccttatttctctagggcttgccacaaaatctctc 2076508  T
Q  149 tagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatc--------agataagtagat 240  Q
    | | |||| ||||||||| ||| ||||||||||||||||  ||||||||||||||||||||| ||| |||||| ||||||        |  |||||||||    
T  2076509 tcggtactctatcatacgccttttccaaatcaatgaaaattaagtgcaagtcttttttatccgtccgatatcgctccatcccgcgtcgaagtaagtagat 2076608  T
Q  241 cacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
       ||||||||||| |||||||| |  ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  2076609 --tgcttccatagtcgacctccc-aggcataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 2076680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 700 - 850
Target Start/End: Original strand, 30415929 - 30416079
Alignment:
Q  700 attgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatc 799  Q
    ||||||||  ||||||  || |||||||||||||| || ||||||||||| || |  |||||||| ||  |||||||| ||||||| |||| ||||||||    
T  30415929 attgaaaataattcaacaaaggtttgtatgataggcatatggggaatgggagggttgggtaaaactacggcagccaaagccatctacaatcaaattcatc 30416028  T
Q  800 gcaagtttgtgcatagaagtttcgttgaaaatatcagagaagcttgtgaaa 850  Q
    |||| |||||| | ||||||||| | |||||||| |||||| |||||||||    
T  30416029 gcaaatttgtgtacagaagtttcatcgaaaatattagagaaacttgtgaaa 30416079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 158 - 311
Target Start/End: Complemental strand, 27196 - 27039
Alignment:
Q  158 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 249  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||||||||| | | |||||| | ||||| |        |||||||||  |||||||    
T  27196 tatcattcgccttctccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgcttcatcacacgttgaagtaagtagat--cgcttcc 27099  T
Q  250 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttctta 311  Q
    ||||| || || |  || |||||||||||| ||||||||||||| |||||||| ||||||||    
T  27098 atagtcgatcttc--aagcataaaaccaaaatggttatcagtaactcaagtcttttttctta 27039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 17212533 - 17212459
Alignment:
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttt 205  Q
    ||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||||||| ||||    
T  17212533 ctttccataaaatctctctaggcactttatcatacgtcttcttcaaatcaatgaaatctaagtgcaagtcatttt 17212459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 3301207 - 3301095
Alignment:
Q  39 ccccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacctttttcttct-tattgctttcca 137  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||  ||||| | |||  ||||||||  |  ||||||||    
T  3301207 ccccatcctgcgtcctcacactagtcgaagctccctcatacatatcatggataactctaatataggcaatcctcacccctttcttctccaaagctttcca 3301108  T
Q  138 caaaatctctcta 150  Q
    |||||||||||||    
T  3301107 caaaatctctcta 3301095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 574 - 777
Target Start/End: Original strand, 20836335 - 20836538
Alignment:
Q  574 aggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaac 673  Q
    ||||||||||||||||||||  ||| ||||||||  ||| |||| | ||||||||| |  |||||  |||||||| | || || ||  |||| ||||||     
T  20836335 aggaatgaaggtgaactagtggagctaattgttgaggacattttgagaaaactagatatctcattgttgtctattactgaatttccgattggattggaat 20836434  T
Q  674 ctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagc 773  Q
    | | ||||||| || || || || |||||||  | || ||| |||| || ||||| |||||||| ||||||||||||||||  || ||||||||||| ||    
T  20836435 cccatgtgcaacaaattaccaagattattgatgatcaatcatgcaaagtctgtatcatagggatatggggaatgggtggattaggcaaaacaaccacggc 20836534  T
Q  774 caaa 777  Q
    ||||    
T  20836535 caaa 20836538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 37123836 - 37123755
Alignment:
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 212  Q
    |||| |||||||||||| |||  ||| ||||||||   |||||||||||||||||||| |||||||  ||||||||||||||    
T  37123836 ctttacacaaaatctctttaggaactctatcatacagtttctccaaatcaatgaaaactaagtgcacatcttttttatccat 37123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 1288514 - 1288589
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatataaacaatcttaacc 115  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||  ||||| |||||    
T  1288514 cccatcctgcgtcctcacactagtcgaagctccctcatacatatccttgatagccctaatataggcaatcataacc 1288589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 574 - 777
Target Start/End: Original strand, 20809980 - 20810183
Alignment:
Q  574 aggaatgaaggtgaactagtaaagcaaattgttggtgacgttttcacaaaactagacagttcatttctgtctatttccgagttcccagttgggttggaac 673  Q
    |||||||||||||||||||| |||   |||||||   || |||| ||||||||| | |  |||||  |||||||| | || |  ||| |||| ||||||     
T  20809980 aggaatgaaggtgaactagtgaagggtattgttgagtacattttgacaaaactaaatatctcattgttgtctattactgaatatccaattggattggaat 20810079  T
Q  674 ctcgtgtgcaaaaagttgccgagtttattgaaaaacattcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagc 773  Q
    | ||||||||| || || || || |||||||  | || ||| | || || ||||| |||||||| ||||||||||||||||| || ||||||||||| ||    
T  20810080 cccgtgtgcaacaaattaccaagattattgatgatcaatcatggaaagtctgtatcatagggatatggggaatgggtggatcaggcaaaacaaccacggc 20810179  T
Q  774 caaa 777  Q
    ||||    
T  20810180 caaa 20810183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 1274622 - 1274560
Alignment:
Q  40 cccatcccgtgtcctcacactagttgaagctctctcatacatatcattgatagctccaatata 102  Q
    ||||||| | |||||||||||||| ||||||| |||||||||||| |||||||| | ||||||    
T  1274622 cccatcctgcgtcctcacactagtcgaagctccctcatacatatctttgatagccctaatata 1274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 30418662 - 30418593
Alignment:
Q  132 tttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtctt 202  Q
    ||||||||||||||||||||  ||| |||| || ||||||||||||| ||||||||| ||||| |||||||    
T  30418662 tttccacaaaatctctctaggcactctatc-tatgtcttctccaaattaatgaaaactaagtggaagtctt 30418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 1288687 - 1288734
Alignment:
Q  268 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||    
T  1288687 cataaaaccaaattggttatccgtaactcgagtctcctttcttagtct 1288734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 7605809 - 7605754
Alignment:
Q  48 gtgtcctcacactagttgaag-ctctctcatacatatcattgatagctccaatata 102  Q
    ||||||| ||||||||  ||| ||||||||||||||||||||||||||| ||||||    
T  7605809 gtgtcctaacactagtcaaagtctctctcatacatatcattgatagctcgaatata 7605754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 25937220 - 25937173
Alignment:
Q  268 cataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  25937220 cataaaaccaaattggttatcagaaaatcgagtctcatttcgtagtct 25937173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 31503071 - 31503129
Alignment:
Q  138 caaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgca 196  Q
    |||||||| |||||  | ||||||||| ||||||||||||||||| ||||| |||||||    
T  31503071 caaaatctttctagacaatttatcatatgtcttctccaaatcaataaaaactaagtgca 31503129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 35685088 - 35685042
Alignment:
Q  166 gtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccat 212  Q
    ||||||||||||||||||||||  ||| | |||||||||||||||||    
T  35685088 gtcttctccaaatcaatgaaaattaagcgtaagtcttttttatccat 35685042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 50 - 293
Target Start/End: Original strand, 13191 - 13442
Alignment:
Q  50 gtcctcacactagttgaagctctctcata--catatcattgatagctccaatataaacaatcttaacctttttcttcttattg-ctttccacaaaatctc 146  Q
    |||||||||||||| ||||||| ||||||  |||||| |||||||||| ||||||  ||||||||||||  |||||||    | ||||||||||||||||    
T  13191 gtcctcacactagtcgaagctccctcatatacatatccttgatagctctaatataggcaatcttaacctcgttcttctccaggactttccacaaaatctc 13290  T
Q  147 tctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca------ga--taagtag 238  Q
    |||||  ||| ||||||||| ||||||||||||||||||||| ||||| |||||||| |||||| ||  |||||| |||| ||      ||  |||||||    
T  13291 tctaggaactctatcatacgccttctccaaatcaatgaaaactaagtgtaagtctttattatccgtcatatatcgctccaccacgcgtcgaagtaagtag 13390  T
Q  239 atcacgcttccatagttgacctcccaaaacataaaaccaaattggttatcagtaa 293  Q
    ||  || ||||||||| |||||||| || ||||||||||||||||||||| ||||    
T  13391 at--cgtttccatagtcgacctccc-aagcataaaaccaaattggttatccgtaa 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 90134 - 90296
Alignment:
Q  158 tatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatcaga--------taagtagatcacgcttcc 249  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||| ||| || || | || |        |||||||||||  |||||    
T  90134 tatcatacgccttctccaaatcaatgaaaactaagtgtaagtcttttttatccgtccgataacgctcgaccacatgtcgaattaagtagatca--cttcc 90231  T
Q  250 atagttgacctcccaaaacataaaaccaaattggttatcagtaaatcaagtctcttttcttagtct 315  Q
    ||||||||||||||    ||||||| ||||||||||||| |||| || ||||||||||||||||||    
T  90232 atagttgacctccc-tggcataaaatcaaattggttatccgtaactcgagtctcttttcttagtct 90296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 5778 - 5614
Alignment:
Q  68 gctctctcatacat--atcattgatagctccaatataaacaatcttaacctttttcttctt-attgctttccacaaaatctctctagctactttatcata 164  Q
    ||||||||||||||  ||| |||||||||| |||||| | |||| ||||| |||||||||  |  | |||||| |||||||||| |   ||| |||||||    
T  5778 gctctctcatacatgtatccttgatagctctaatatacataatcctaacccttttcttctccagagttttccataaaatctctcgacacactatatcata 5679  T
Q  165 cgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttatccatccaatatcgttccatca 229  Q
    || ||||||||||| ||||||||| |||||| | | |||||||||  || ||||||| |||||||    
T  5678 cgccttctccaaataaatgaaaactaagtgcgattgttttttatcagtcaaatatcgctccatca 5614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 518 - 595
Alignment:
Q  131 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagtgcaagtcttttttat 208  Q
    ||||||| ||| |||||||||  | | ||||||||  ||||||||||||||||||||| |||| |||||| |||||||    
T  518 ctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaactaagtacaagtcgtttttat 595  T

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Target: scaffold0468 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 819
Target Start/End: Complemental strand, 8316 - 8209
Alignment:
Q  712 tcaagcaatgtttgtatgatagggatctggggaatgggtggatctggtaaaacaaccacagccaaatccatctataatcgaattcatcgcaagtttgtgc 811  Q
    |||||||| ||||  ||| ||||||||||||| ||||| || |  |||||||| |||| |||||||    |||| |||  |||||||| |||||||||||    
T  8316 tcaagcaaagtttccatggtagggatctggggcatgggcgggttgggtaaaactaccatagccaaaggtgtctacaataaaattcatcacaagtttgtgc 8217  T
Q  812 atagaagt 819  Q
    ||||||||    
T  8216 atagaagt 8209  T

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