View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_11 (Length: 522)
Name: NF3570_low_11
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 504
Target Start/End: Complemental strand, 1493388 - 1492902
Alignment:
| Q |
14 |
cacagatacacgtcgacactgctaattccaaaaacatagaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaaca |
113 |
Q |
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| T |
1493388 |
cacagatacacgtcgacactgctaattccaaaaacattgaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaaca |
1493289 |
T |
|
| Q |
114 |
aatgtttgctgaagtttcatctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgac |
213 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493288 |
aatgtttgctgaagtttcatctcaactgcatttttgactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgac |
1493189 |
T |
|
| Q |
214 |
aattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttggannnnnnnnnnnnnnnngttctatagtgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
1493188 |
aattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttggattttttttttgtttttggtctatagtgt |
1493089 |
T |
|
| Q |
314 |
ctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacagaagaaacaatagaaggaaaataactacactacaagccaaattgctga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1493088 |
ctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacacaggaaacaatagaaggaaaataactacactacaagccaaaatgctga |
1492989 |
T |
|
| Q |
414 |
ttgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcacattaattaatttgtgtgatgaggttgaagtgga |
504 |
Q |
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| T |
1492988 |
ttgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcac----attaatttgtgtgatgaggttgaagtgga |
1492902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 1487442 - 1487313
Alignment:
| Q |
131 |
catctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgacaattagttatgagctgc |
230 |
Q |
| |
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||||| ||||| ||||| || |||||||||| || || ||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| ||||| |
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| T |
1487442 |
catcttaactgtattttggaccattgattcaaaatatgaacatgtgtttctgtaatagtcaacactaagttttgatgc--gacaattatttacaagctgt |
1487345 |
T |
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| Q |
231 |
aaaagaaacaggttaacaaggaaggtgaggaa |
262 |
Q |
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| T |
1487344 |
aagagaaacagattaacaaggaaggtgaggaa |
1487313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 39800609 - 39800538
Alignment:
| Q |
60 |
acctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaagtttc |
131 |
Q |
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| T |
39800609 |
acctgaacaaaacaatcatgaaagaagagacgaagggtagcaggaacagtaacaaaagtttgttgaaatttc |
39800538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 53053645 - 53053585
Alignment:
| Q |
66 |
acaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaa |
126 |
Q |
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|||||||||||||||||||| || ||||| || ||||| || || ||||||||||| |||| |
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| T |
53053645 |
acaaaacaatcatggaagaaaagtctaagagtggcaggagcagtgacaaatgtttgttgaa |
53053585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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