View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_12 (Length: 497)
Name: NF3570_low_12
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 53298316 - 53298779
Alignment:
| Q |
18 |
aaaggatgagaggatagtctcgaattcggtcatggaggataaatctcatgaaccatttctaaagtctttaaggtcctaattttaaccatattttggggga |
117 |
Q |
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| T |
53298316 |
aaaggatgagaggatagtctcgaattcggtcatggaggataaatctcatgaaccatttctaaagtcattaaggtcctaattttaaccatattttggggga |
53298415 |
T |
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| Q |
118 |
nnnnnnnnncttttctttccccttgtttattcccttttaaataggctttgagttgtaaatgggttgagtacctcacgtaatcttatttctaattgaaata |
217 |
Q |
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| T |
53298416 |
-----------ttttttttcccttgtttattccgttttaaataggctttgagttgtaaatgggttgagtacctcacgtaatcttatttctaattgaaata |
53298504 |
T |
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| Q |
218 |
tctttgcagtgataaaaattaataaatcaaataaatattcattagtaccc----accatttgaaaaacatgagatttgtgaacttttatttaaagcttgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
53298505 |
tctttgcagtgataaaaattaataaatcaaataaatattcattagtacccacccaccatttgaaaaacatgagatttttttacttttatttaaagcttgt |
53298604 |
T |
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| Q |
314 |
tgttgggtgtgcattttaggtcaatgtagtgctcatttaatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactgctaatcatt |
413 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53298605 |
tgtggggtgtgcattttaggtcaatgtagtgctcatttaatttcgaaatatttcttcgctgtcgtgttggctcaagtttgcaagaacactactaatcatt |
53298704 |
T |
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| Q |
414 |
atcccagtatatttcatcaatataagcaacatactggtatctcattgatcctagctggggtcatatattgatatt |
488 |
Q |
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| T |
53298705 |
atcccagtatatttcatcaatgtaagcaacatactggtatctcattgatcctagctggggtcatatattgatatt |
53298779 |
T |
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