View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_13 (Length: 478)
Name: NF3570_low_13
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 100 - 466
Target Start/End: Original strand, 30767317 - 30767687
Alignment:
| Q |
100 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccat-taataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
198 |
Q |
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| T |
30767317 |
aagaatgtgtccaatgtccattaatcttgatagagaatgatccatccatataataagatgcatgaaagaaatttaaaaaggaacaaggagtgggagaata |
30767416 |
T |
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| Q |
199 |
---attttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
295 |
Q |
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| T |
30767417 |
ataattttgctgagttttattcatttgttccataaagctaaagatatataaaagattacaactttatgctaatattatcagtggaataatacctgataga |
30767516 |
T |
|
| Q |
296 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaacct |
395 |
Q |
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| T |
30767517 |
aaactttgctcagttgtgattaggagaagaagaaggtctattagaagaaactctatgaccctcttctccaccttgaactgtatcaggaatgcagaaacct |
30767616 |
T |
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| Q |
396 |
gctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30767617 |
gctaatccatcagaaacaaacctgcttccaaagattgaagcttgatgaacttgttgagacctgtgatgatg |
30767687 |
T |
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