View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_26 (Length: 322)
Name: NF3570_low_26
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 46005857 - 46005546
Alignment:
| Q |
1 |
tgttatttatgatggacagactaatataaagtatccaattcatcgttcattttagacccatttaaccccaaattaagagagcatcacttgttaaaacatg |
100 |
Q |
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| T |
46005857 |
tgttacttatgatggacagactaatacaaagtatccaattcatcgttcattttagacccatttaaccccaaattaacagagcatcacttgttaaaacatg |
46005758 |
T |
|
| Q |
101 |
taaaagccaattgtttcttttttaaaaataatgaaaacaatacacaacgttttatatatgatagtgtgccatgacccactggtnnnnnnngaaacaaacg |
200 |
Q |
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| T |
46005757 |
taaaagccaattgtttcttttttaaaaataatgaaaacaatacacaacgttttatatatgatagtgtgccatgacccactggtaaaaaaagaaacaaacg |
46005658 |
T |
|
| Q |
201 |
aagacataataatcaatgtaaattcataatgttttctgctctagcatcagagcaaggatttgactggctcctaatttttgccagagcattgatatcagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46005657 |
aagacataataatcaatgtaaattcataatgttttctgctctagcatcagagcaaggatttgactggctcctaatttttgccagagcattgatatcagaa |
46005558 |
T |
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| Q |
301 |
aattactctctg |
312 |
Q |
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|||||||||||| |
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| T |
46005557 |
aattactctctg |
46005546 |
T |
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