View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3570_low_27 (Length: 307)
Name: NF3570_low_27
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 54074330 - 54074630
Alignment:
| Q |
1 |
atatctttcatattcccaatccattcctatttatgaataaaactcaaaaacgagtgctgatttcacctc--------------tctatctatctatctat |
86 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54074330 |
atatctttcatattcccaattcattcctatctatgaataaaactcaaaa-cgagtgctgatttcacctcacaccatccccctctctatctatctatctat |
54074428 |
T |
|
| Q |
87 |
ctgtaacaaatttcatcacacttttcagttttcactcatatagaacatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaatt |
186 |
Q |
| |
|
|||||||| || | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54074429 |
ctgtaaca------------ct----acttttcactcatatagaaaatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaatt |
54074512 |
T |
|
| Q |
187 |
caacaaaaacattcattagtagtccttgggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcatt |
286 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54074513 |
caacaacaacattcattagtagtccttgggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcatt |
54074612 |
T |
|
| Q |
287 |
ttctcttcatctcactcg |
304 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
54074613 |
ttctcttcatctctctcg |
54074630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University