View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3570_low_38 (Length: 248)

Name: NF3570_low_38
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3570_low_38
NF3570_low_38
[»] chr8 (2 HSPs)
chr8 (1-129)||(1488093-1488223)
chr8 (159-238)||(1488253-1488332)
[»] chr3 (2 HSPs)
chr3 (1-129)||(50306129-50306261)
chr3 (159-238)||(50306291-50306370)
[»] chr2 (2 HSPs)
chr2 (1-129)||(26021517-26021649)
chr2 (159-238)||(26021679-26021758)
[»] chr1 (3 HSPs)
chr1 (1-129)||(3788745-3788877)
chr1 (159-238)||(3788636-3788715)
chr1 (59-103)||(37689707-37689751)
[»] chr4 (1 HSPs)
chr4 (63-119)||(28123965-28124021)
[»] chr5 (1 HSPs)
chr5 (59-116)||(30003342-30003400)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 1488093 - 1488223
Alignment:
Q  1 tttgtttgaagctataaagattgttttttctaacnnnnnnnaaattacaattcatgaaattgtttttaataattggttccat--aaaaaacatgcttctt 98  Q
    ||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1488093 tttgtttgaagctataaagattgttttttctaactttttttaaattacaactcatgaaattgtttttaataattggttccataaaaaaaacatgcttctt 1488192  T
Q  99 aattgcaacacgtgaagaattggtttgaatc 129  Q
    ||||||||||||||||  |||||||||||||    
T  1488193 aattgcaacacgtgaattattggtttgaatc 1488223  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 1488253 - 1488332
Alignment:
Q  159 aaaaacaacatggtgaagatgagattggattgtagtttcatggcggatgagatgctagtgttgatggttcatggtctctg 238  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1488253 aaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctg 1488332  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 50306129 - 50306261
Alignment:
Q  1 tttgtttgaagctataaagattgttttttctaacnnnnnnn--aaattacaattcatgaaattgtttttaataattggttccat--aaaaaacatgcttc 96  Q
    ||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  50306129 tttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggttccataaaaaaaacatgcttc 50306228  T
Q  97 ttaattgcaacacgtgaagaattggtttgaatc 129  Q
     ||||||||||||||||||||||||||||||||    
T  50306229 ctaattgcaacacgtgaagaattggtttgaatc 50306261  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 50306291 - 50306370
Alignment:
Q  159 aaaaacaacatggtgaagatgagattggattgtagtttcatggcggatgagatgctagtgttgatggttcatggtctctg 238  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50306291 aaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctg 50306370  T

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Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 26021517 - 26021649
Alignment:
Q  1 tttgtttgaagctataaagattgttttttctaacnnnnnnn--aaattacaattcatgaaattgtttttaataattggttccat--aaaaaacatgcttc 96  Q
    ||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  26021517 tttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggttccataaaaaaaacatgcttc 26021616  T
Q  97 ttaattgcaacacgtgaagaattggtttgaatc 129  Q
     ||||||||||||||||||||||||||||||||    
T  26021617 ctaattgcaacacgtgaagaattggtttgaatc 26021649  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 26021679 - 26021758
Alignment:
Q  159 aaaaacaacatggtgaagatgagattggattgtagtttcatggcggatgagatgctagtgttgatggttcatggtctctg 238  Q
    |||||||||||||||||||||| | |||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  26021679 aaaaacaacatggtgaagatgaaaatggattgtagtttcatgatggatgagatgctagtgttgatggttcatggtctctg 26021758  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3788877 - 3788745
Alignment:
Q  1 tttgtttgaagctataaagattgttttttctaacnnnnnnn--aaattacaattcatgaaattgtttttaataattggttccataaaaaa--catgcttc 96  Q
    ||||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||    
T  3788877 tttgtttgaagctataaagattgttttttctaactttttttttaaattacaactcatgaaattgtttttaataattggttccataaaaaaaacatgcttc 3788778  T
Q  97 ttaattgcaacacgtgaagaattggtttgaatc 129  Q
     ||||||||||||||||||||||||||||||||    
T  3788777 ctaattgcaacacgtgaagaattggtttgaatc 3788745  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 3788715 - 3788636
Alignment:
Q  159 aaaaacaacatggtgaagatgagattggattgtagtttcatggcggatgagatgctagtgttgatggttcatggtctctg 238  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3788715 aaaaacaacatggtgaagatgaaaatggattgtagtttcatggtggatgagatgctagtgttgatggttcatggtctctg 3788636  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 37689707 - 37689751
Alignment:
Q  59 attgtttttaataattggttccataaaaaacatgcttcttaattg 103  Q
    |||| |||| ||||||||||||||||||| |||| ||||||||||    
T  37689707 attgattttgataattggttccataaaaagcatgtttcttaattg 37689751  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 28123965 - 28124021
Alignment:
Q  63 tttttaataattggttccataaaaaacatgcttcttaattgcaacacgtgaagaatt 119  Q
    |||||| ||||||| |||||||||| | || ||||||||||||||||||||||||||    
T  28123965 tttttattaattgggtccataaaaagcttgtttcttaattgcaacacgtgaagaatt 28124021  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 30003342 - 30003400
Alignment:
Q  59 attgtttttaataattggttccataaaaaacatgcttcttaattgcaa-cacgtgaaga 116  Q
    |||| |||| ||||||||||||||||||| |||| |||||||||| || ||||||||||    
T  30003342 attgattttgataattggttccataaaaagcatgtttcttaattgtaagcacgtgaaga 30003400  T

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