View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_39 (Length: 247)
Name: NF3570_low_39
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48593327 - 48593098
Alignment:
| Q |
1 |
taatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48593327 |
taatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcagaatcatgttaccatcaaccacacaatct |
48593228 |
T |
|
| Q |
101 |
tccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593227 |
tccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcac |
48593128 |
T |
|
| Q |
201 |
acacaagtctttcctttctagtaactatat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
48593127 |
acacaagtctttcctttctagtaactatat |
48593098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48597938 - 48597709
Alignment:
| Q |
1 |
taatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48597938 |
taatgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcagaatcatgttaccatcaaccacacaatct |
48597839 |
T |
|
| Q |
101 |
tccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48597838 |
tccattcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcac |
48597739 |
T |
|
| Q |
201 |
acacaagtctttcctttctagtaactatat |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
48597738 |
acacaagtctttcctttctagtaactatat |
48597709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 23230938 - 23231148
Alignment:
| Q |
8 |
ttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttccattc |
107 |
Q |
| |
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||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||| |||||||||||||||| |
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| T |
23230938 |
ttttcccatatcttttggtctcttcccatagcccaaatgttcacacaaaccattgatccttttggaaccattttaccatcaacaacacaatcttccattc |
23231037 |
T |
|
| Q |
108 |
ccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacacacaag |
207 |
Q |
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| ||||||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
23231038 |
ctttcctcataatcatcggtatcggagggtgaagcctcatggtttcttttatgatggcatgtatataaggaaggtttggactgtcttcttcacacactaa |
23231137 |
T |
|
| Q |
208 |
tctttcctttc |
218 |
Q |
| |
|
||||||||||| |
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|
| T |
23231138 |
tctttcctttc |
23231148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 23223189 - 23223401
Alignment:
| Q |
4 |
tgggttttcccatatctttgggtcccttgccatagcccaaatgtttacacaaaccattgagcctttcggaatcatgttaccatcaaccacacaatcttcc |
103 |
Q |
| |
|
|||||||| ||| |||||| ||||||| | |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||||||||||| |
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|
| T |
23223189 |
tgggtttttccaagtctttgagtcccttccaatagcccaaatgttcacacaaactattgagccttttttgatcattttcccatcgaccacacaatctttt |
23223288 |
T |
|
| Q |
104 |
attcccttcctcataatcatcggtatcgggggatgaagcctcattgtttcttttatgatagcatgtatataaggaaggtttggaccgtcttcttcacaca |
203 |
Q |
| |
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|||| ||||| ||||||||||| || || |||||||||| |||||||||||| || || ||||||||||||||||||||| |||| ||||||| | |
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| T |
23223289 |
gttcctttcctagcaatcatcggtagtggtgggtgaagcctcaatgtttcttttataatggcttgtatataaggaaggtttggaatgtctgcttcacata |
23223388 |
T |
|
| Q |
204 |
caagtctttcctt |
216 |
Q |
| |
|
| ||||||||||| |
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|
| T |
23223389 |
ctagtctttcctt |
23223401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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