View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_4 (Length: 741)
Name: NF3570_low_4
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Original strand, 18484475 - 18484953
Alignment:
| Q |
19 |
gctttcacgttctgtagagcatattgacgtgcatgaatcccccatactgaatttatctgcttctattctggaaaagagtccctcccaacttcatgattca |
118 |
Q |
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| T |
18484475 |
gctttcacgttctgtatagcatattgacgtgcatgaatcccccatactgaatttatctgcttctattctggaaaagagtccctcccaacttcatgattca |
18484574 |
T |
|
| Q |
119 |
caagcggatacacacggatctgatcatgcaggttcggccttagcttgcaaatgtcacttcttctgttgtccgggaacagtcggatttgtgtggaatggat |
218 |
Q |
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| T |
18484575 |
caagcg-atacacacggatctgatcatgcaggttcggccttagcttgcaaatgtcacttcttctattgtccgggaacagtcggatttgtgtggaatggat |
18484673 |
T |
|
| Q |
219 |
gacagtaccgcaaggcatcaggtgcacagccagatgcagcaaggtgatgtggcggttcagcaggtatacaccagcagctcccatgagcctgtcacaacca |
318 |
Q |
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| T |
18484674 |
gacagtaccgcaaggcatcaggtgcacagccaggtgcagcaaggtgatatggcggttcagcaggtatacaccagcagctcccatgagcctgtcacaacca |
18484773 |
T |
|
| Q |
319 |
tgggggagcagcacagctccgcacctttccagcaagcattttctagcattcaagaggacatccccgtggaaatcttggcagaacagcaccccaatcttgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18484774 |
tgggggagcagcacagctccgcacctttccagcaagcattttctagcattcaagaggacatccccgtggaaatcttggcagaacagcaccccaatcttgt |
18484873 |
T |
|
| Q |
419 |
cattcaaggtgacttagatttatggaacaaagttcaggaatatgatcaacgcacagcagaggaaattttcactcaggtta |
498 |
Q |
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| T |
18484874 |
cattcaaggtaccttagatttatggaacaaaattcaagaatatgatcaacgcacagcagaggaaattttcactccggtta |
18484953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 526 - 735
Target Start/End: Original strand, 18484988 - 18485197
Alignment:
| Q |
526 |
tgaaggaacaaattcttgggaatccgtcgtatagaacccactcatggggtaatccatctccaaccaaccaatgaatgttatttattggaaagctcgaggg |
625 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||| | |
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| T |
18484988 |
tgaaggcacaaattcttgggaatccgccgtatagaacccactcatggggtgatccatctccaactgaccaatgaatgttatttattcgaacgctcgagag |
18485087 |
T |
|
| Q |
626 |
agatgagcccctcgctagcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
725 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18485088 |
agatgagcccctcgcttgcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
18485187 |
T |
|
| Q |
726 |
ctttgctact |
735 |
Q |
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| |||||||| |
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| T |
18485188 |
cattgctact |
18485197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 622 - 735
Target Start/End: Original strand, 11212678 - 11212791
Alignment:
| Q |
622 |
agggagatgagcccctcgctagcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgtta |
721 |
Q |
| |
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||||||||||| ||||||| | ||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
11212678 |
agggagatgagtccctcgccaacccagatcaatgaatctcaatctgaggtgcatacaggttcgccccacctgcactcacaagccaaagtttctgctgttt |
11212777 |
T |
|
| Q |
722 |
cggcctttgctact |
735 |
Q |
| |
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||||| |||||||| |
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|
| T |
11212778 |
cggccattgctact |
11212791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 626 - 732
Target Start/End: Complemental strand, 34216059 - 34215953
Alignment:
| Q |
626 |
agatgagcccctcgctagcccagctcaatgaatcacaatctgaggtgcatacatgttcaccccacctgcactcacaagccaaaatttctgctgttacggc |
725 |
Q |
| |
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||||||| |||||||| |||||| |||||||||| |||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| |||| |||| |
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| T |
34216059 |
agatgagtccctcgctggcccagatcaatgaatcgcaatctaaggtgcatacaggttcgccccgcctgcactcacaagccaaaatttctgttgtttcggc |
34215960 |
T |
|
| Q |
726 |
ctttgct |
732 |
Q |
| |
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| ||||| |
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| T |
34215959 |
cattgct |
34215953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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