View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_42 (Length: 238)
Name: NF3570_low_42
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31009796 - 31009575
Alignment:
| Q |
1 |
aaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009796 |
aaaggtggcctattttccaaaaagacaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagcca |
31009697 |
T |
|
| Q |
101 |
aatgtgtcaaacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaatnnnnnnnncctttggtgaaaaacccaataaagatgatgagtt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31009696 |
aatgtgtcaaacttggaattgcattcaaacccaattgaaaagggaaacaagcccaaataaaaaaaacctttggtgaaaaacccaataaagatgatgagtt |
31009597 |
T |
|
| Q |
201 |
tgtattatgactaagatgtatc |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
31009596 |
tgtattgtgactaagatgtatc |
31009575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 9782909 - 9783041
Alignment:
| Q |
25 |
acaaaaacatcctcaaccattacaactcccatagctccaagatcaacaacatcagcaaatatactcaaaggagccaaatgtgtcaaacttggaattgcat |
124 |
Q |
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|
||||||||||| |||||||| ||||| | | |||| || |||||||||||||||||| ||||||||||| || ||||| |||||| || || | || |
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| T |
9782909 |
acaaaaacatcttcaaccataacaacactcttagcagaaatatcaacaacatcagcaaaaatactcaaaggggctaaatgggtcaaagttttgatcgaat |
9783008 |
T |
|
| Q |
125 |
tcaaacccaattgaaaagggaaacaagcccaaa |
157 |
Q |
| |
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|||| || |||||||| || |||||| |||||| |
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|
| T |
9783009 |
tcaaccctaattgaaatggaaaacaaccccaaa |
9783041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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