View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_47 (Length: 225)
Name: NF3570_low_47
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 1739091 - 1739286
Alignment:
| Q |
1 |
atctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcatttggtgaactaagttttcaaacaagagatatgtaaatta |
100 |
Q |
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| T |
1739091 |
atctgtaaacaagttcaattcatg----tataaagatatcagtttcgagtaggtaattcatttggtgaactaagttttcaaacaagagatatgtaa---a |
1739183 |
T |
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| Q |
101 |
gtaataaaactactaacttacagatattttcttatgnnnnnnngaaatgagaaatcaattacatgtgtcataaaatgtttttattttcttgagaaatcaa |
200 |
Q |
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| T |
1739184 |
gtaataacactactaacttacagatattttcttatgaaaaaaagaaatgagaaatcaattacatgtgtcataaaatgtttttattttcttgagaaatcaa |
1739283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 1717594 - 1717667
Alignment:
| Q |
1 |
atctgtaaacaagttcaattcatgcatgtataaagaaatcagtttcgagtaggtaattcatttggtgaactaagtttt |
78 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
1717594 |
atctgtaaacaagttcaattcatg----tataaagaaatcagtttcgagtaggtaattcatttggttaacaaagtttt |
1717667 |
T |
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