View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_48 (Length: 224)
Name: NF3570_low_48
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 28438373 - 28438574
Alignment:
| Q |
1 |
gctatttggtgcactcaagaggatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtc |
100 |
Q |
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| T |
28438373 |
gctatttggtgtactcaagaagatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagagattgttgaagttgcaattcctccaagtc |
28438472 |
T |
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| Q |
101 |
cctacctctacggttcttttagttgaaattaaaattagttcccttcgggtgtaattttgatgcatcttgtaatttgttttactaagactactatttgtct |
200 |
Q |
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| T |
28438473 |
cctacctctatggttcttttagttgaaattaaaattagttcccttcggatgtaattttgatgcttcttgtaatttgttttactaagtctactatttgtct |
28438572 |
T |
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| Q |
201 |
at |
202 |
Q |
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|| |
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| T |
28438573 |
at |
28438574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28488429 - 28488568
Alignment:
| Q |
1 |
gctatttggtgcactcaagaggatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtc |
100 |
Q |
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||||||||||||| |||||| ||||| |||||||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||| |||| ||||||| |
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| T |
28488429 |
gctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgttttactgatgttagaaggaattgttgaagttgcagttcccccaagtc |
28488528 |
T |
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| Q |
101 |
cctacctctacggttcttttagttgaaattaaaattagtt |
140 |
Q |
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| T |
28488529 |
cctatctgtatggttctgtaagttgtaattagaattagtt |
28488568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 28445822 - 28445956
Alignment:
| Q |
1 |
gctatttggtgcactcaagaggatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtc |
100 |
Q |
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||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||| | ||| |||||| |||||||||||||||| ||| ||||||| |
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| T |
28445822 |
gctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaaggttttactgatgttagaaggaattgttgaagttgcagctcccccaagtc |
28445921 |
T |
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| Q |
101 |
cctacctctacggttcttttagttgaaattaaaat |
135 |
Q |
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|||| || || |||||| | |||| ||||||||| |
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| T |
28445922 |
cctatctatatggttctgtaagttctaattaaaat |
28445956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 28466668 - 28466771
Alignment:
| Q |
1 |
gctatttggtgcactcaagaggatccatctcttagaccaacaatgaagaaggttttgcaaatgctagaagaaattgttgaagttgcaattcctccaagtc |
100 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||| |||||||||||||| ||||| | ||| |||||| |||||||||||||||| |||| ||||||| |
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| T |
28466668 |
gctatttggtgcattcaagaagatccttctcttaggccaacaatgaagaatgttttactgatgttagaaggaattgttgaagttgcagttcccccaagtc |
28466767 |
T |
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| Q |
101 |
ccta |
104 |
Q |
| |
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|||| |
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| T |
28466768 |
ccta |
28466771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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