View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_49 (Length: 218)
Name: NF3570_low_49
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 24728560 - 24728747
Alignment:
| Q |
16 |
agaggccattttgttggtaagtttatttcattcattacctgtttcatgttcaaccagggttttaaattgtggtcatggtaacagttgtggccacgtcgtg |
115 |
Q |
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| T |
24728560 |
agaggccattttgttggtaagtttatttcattcattacctgtttcatgttcaaccagtgttttaaattgtggtcatggtaacagttgtggccacgtcgtg |
24728659 |
T |
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| Q |
116 |
atctttgacattacaaagaatcgcagtaaaacacaggcctcaatcgttgttgtgttgtattttccgaaaaatcaaaaactgttatgtt |
203 |
Q |
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| T |
24728660 |
atctttgacattgcaaagaatcgcagtaaaacacaggcctcaatcgttgttttgttgtattttccgaaaaatcaaaaactgttatgtt |
24728747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 24689053 - 24689103
Alignment:
| Q |
16 |
agaggccattttgttggtaagtttatttcattcattacctgtttcatgttc |
66 |
Q |
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| T |
24689053 |
agagggcattttgttggttagtttattacattcattacctttctcatgttc |
24689103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 24689208 - 24689266
Alignment:
| Q |
69 |
ccagggttttaaattgtggtcatggtaacagttgtggccacgtcgtgatctttgacatt |
127 |
Q |
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| T |
24689208 |
ccagggttttaaatagtggtcgtggcaacagttgtggccacatcgcaatcttggacatt |
24689266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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