View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_5 (Length: 733)
Name: NF3570_low_5
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 722
Target Start/End: Complemental strand, 864216 - 863505
Alignment:
| Q |
18 |
aatgccacatccttaacatgaacataagattgtgttgcattcacataagttttggcagcaccattaaggtacttgagtatgtgaattgtactagcattaa |
117 |
Q |
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| T |
864216 |
aatgccacatccttaacatgaacataagattgtgttgcattcacataagtttttgcagcaccattaaggtacttgagtatgtgaattgtactagcattaa |
864117 |
T |
|
| Q |
118 |
ttgttggttgtagcaatggtccaagaaccacaactgggttcaccacaaccaaatcaacttgattttcttttgctatatcccatgctgattgttcagccac |
217 |
Q |
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| T |
864116 |
ttgttggttgtaacaatggtccaagaactacaactgggttcaccacaaccaaatcaacttgattttcttttgctatatcccatgctgattgttcagccac |
864017 |
T |
|
| Q |
218 |
tgtcttcccataacaataccagttctgcacaca--aaaaataatttaaattattcatcacctaattaattaataaccagatctctgcacaagacgaacat |
315 |
Q |
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||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
864016 |
tgtcttcccataacaataccagttctgcacacacaaaaaaaaagttaaattattcatcacctaattaattaataaccagatctctgcacaagacgaacag |
863917 |
T |
|
| Q |
316 |
agtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatatagac |
415 |
Q |
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| T |
863916 |
agtgaattaatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgggtccatatagac |
863817 |
T |
|
| Q |
416 |
cgttccaatcgatgaagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgctggctccaacatctca |
515 |
Q |
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| T |
863816 |
cgttccaatcgatgaagtgaaaacaacacgtcgcactttagcttccgcggacgctataatcacattcttagttccattcactgctggctctaacatctca |
863717 |
T |
|
| Q |
516 |
tcctattatatgttccataaaatgattaatttaccttataa--gttgctctttataaatg---ttatattttcgaatggaaaacaatgaaaataactcac |
610 |
Q |
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| T |
863716 |
tcctattatatgttccataaaatgattaattcaccttataactgttacattttctatgtgaaattaaatttacaaatggaaaacaaagaaaattccttac |
863617 |
T |
|
| Q |
611 |
agggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattggatagattgaagatcaagaagatcaaccttatgcaaa |
710 |
Q |
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| T |
863616 |
agggttgtcagtgacaggagaggctgtgtggaacacaccatggcaaccatgaacaacagattggatagattgaagatcaagaagatcaaccttatgcaaa |
863517 |
T |
|
| Q |
711 |
gttagcctctct |
722 |
Q |
| |
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|||| ||||||| |
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| T |
863516 |
gttaacctctct |
863505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 323 - 414
Target Start/End: Complemental strand, 854182 - 854092
Alignment:
| Q |
323 |
taatcaaaccttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatataga |
414 |
Q |
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| T |
854182 |
taatcaaaccttggtgttcttgcaatattctaaatcactccaatatgaatcat-aaccacaacaaccctacttgtatttgggtccaaataga |
854092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 673
Target Start/End: Complemental strand, 854049 - 853981
Alignment:
| Q |
605 |
actcacagggttgtcggtgacgggggaggctgtgtggaacacaccatggcaaccatggacaacagattg |
673 |
Q |
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| T |
854049 |
actcacagggttgtcggtgacaggataggctgtgtggagtacaccatgacaagcatgaactacagattg |
853981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 45243397 - 45243172
Alignment:
| Q |
18 |
aatgccacatccttaacatgaacataagattgtgttgcattcacataagttttggcagcaccattaaggtacttgagtatgtgaattgtactagcattaa |
117 |
Q |
| |
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||||| |||||| ||||||||||||||| |||||||||||| |||| || || || | |||| | ||||| || |||||||||||||| || ||||| | |
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| T |
45243397 |
aatgcaacatccctaacatgaacataagcttgtgttgcatttgcataggtcttagctgaaccagttaggtattttagtatgtgaattgtgcttgcattga |
45243298 |
T |
|
| Q |
118 |
ttgttggttgtagcaatggtccaagaaccacaactgggttcaccacaaccaaatcaacttgattttcttttgctatatcccatgctgattgttcagccac |
217 |
Q |
| |
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|||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||| || || |||||||||| ||||||||||| | ||| ||||| |
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| T |
45243297 |
ttgtaggttgtagcaatggtccaagaaccaaaactggattcactacaaccaaatccacacctttctcttttgctacatcccatgctgctgcttctgccac |
45243198 |
T |
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| Q |
218 |
tgtcttcccataacaataccagttct |
243 |
Q |
| |
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|| |||||||| |||||||| |||| |
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| T |
45243197 |
tgctttcccatagcaataccaattct |
45243172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 507
Target Start/End: Complemental strand, 45243091 - 45242914
Alignment:
| Q |
330 |
accttggtgttcttgcaatgctctaaatcactccaatatgattcatcaacgacaacatctctactagtatttgtgtccatatagaccgttccaatcgatg |
429 |
Q |
| |
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|||||||| ||||||||| ||| ||||||||||| | || |||||||| | ||||| ||| |||| | |||||||||||| | ||||| |||| |
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| T |
45243091 |
accttggttttcttgcaaaactccaaatcactccagcaagactcatcaacctctacatcaacactcctattggggtccatatagactgcaccaattgatg |
45242992 |
T |
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| Q |
430 |
aagtgaacacaacacgtcgcacttttgcttccgcagacgctataatcacattctttgttccattcactgctggctcca |
507 |
Q |
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| T |
45242991 |
atgtgaaaaccacgcgcctcacttttgcttctgcaccagctatgatcacattctttgctccattcactgctggctcca |
45242914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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