View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3570_low_6 (Length: 632)
Name: NF3570_low_6
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3570_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 18 - 616
Target Start/End: Complemental strand, 32015616 - 32015021
Alignment:
| Q |
18 |
cattttgccacatatttttaataacaatgtagagtacctcttcattccaacatgtccctaaactccacattattatttgtttgttttcaatttctataaa |
117 |
Q |
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| T |
32015616 |
cattttgccacatatttttaataacaatgtagagcacctcttcattccaacatgtccctaaactccacattattatttgtttgttttcaatttctataaa |
32015517 |
T |
|
| Q |
118 |
atcaaggacacaaatatctgaagtaaacaaaagtgaaaagnnnnnnnnntagttcaaaatcaagacaataaaacttaaaacatcaagcaacaagttgttc |
217 |
Q |
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| T |
32015516 |
atcaaggacacaaatatctgaagtaaagaaaagtgaaaa---aaaaaaatagttcaaaatcaagacaataaaacttaaaacatcaagcaacaagttgttc |
32015420 |
T |
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| Q |
218 |
ataatnnnnnnncgacttaaaga-gtacaaggttgaacaagatgccccaaaacaaaaatttcaagtatgattctatgaacaaaattgggactttttcgtg |
316 |
Q |
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| T |
32015419 |
ataataaaaaaacgacttaaaaaagtaagagggtgaacaagatgccccaaaacaaaaatttcaagtatgattctatgaacaaaattgggactttttcgtg |
32015320 |
T |
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| Q |
317 |
tgagtctgattaattatttgacaaaagtttttgtctttgacaatggttggtgaagaagggttgccaac-caaagcataacaagtcgcttctagacttcta |
415 |
Q |
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| T |
32015319 |
tgagtctgattaattatttgacaaaagttt--gtctttgacaatggatggtgaagaagggttgccaactcaaagcataacaagttgcttctagacttctg |
32015222 |
T |
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| Q |
416 |
cttctagttctatttggagaagaacaatgctttgcactgagccacatttgtgcttctcgttgcaaaataattgtcccggatgaatgtagcaaacattgtt |
515 |
Q |
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| T |
32015221 |
cttctagttctatttggagaagaacaatgctttgcgctgagccacatttgtgcttctcgttgcaaaataattgtcccggatgaatgtagcaaacattgtt |
32015122 |
T |
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| Q |
516 |
tctccatctagaaaacgaagcatggaacttacatttatagcaccttgtattggttttctccaaactgtgctgactaattgatgctgcacaacttctctgc |
615 |
Q |
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| T |
32015121 |
tctccatctagaaaacgaagcatgcaacatacatttatagcaccttgtattggttttctccaaactgtgctgactaattgatgctgcacaacttctctgc |
32015022 |
T |
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