View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3570_low_8 (Length: 573)

Name: NF3570_low_8
Description: NF3570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3570_low_8
NF3570_low_8
[»] chr3 (16 HSPs)
chr3 (18-151)||(8895050-8895184)
chr3 (467-564)||(8895695-8895790)
chr3 (396-468)||(8895430-8895502)
chr3 (253-324)||(8895287-8895358)
chr3 (255-321)||(48338034-48338100)
chr3 (268-324)||(14206695-14206751)
chr3 (268-324)||(14214443-14214499)
chr3 (253-324)||(46688536-46688607)
chr3 (253-324)||(46690208-46690279)
chr3 (255-310)||(48336480-48336535)
chr3 (253-321)||(2764003-2764071)
chr3 (261-320)||(50003141-50003200)
chr3 (253-322)||(43393966-43394035)
chr3 (433-462)||(49486056-49486085)
chr3 (253-321)||(2762920-2762988)
chr3 (253-321)||(44115568-44115636)
[»] chr1 (8 HSPs)
chr1 (254-324)||(45042741-45042811)
chr1 (253-324)||(49618562-49618633)
chr1 (254-324)||(52439199-52439269)
chr1 (253-324)||(49619732-49619803)
chr1 (255-324)||(40778505-40778574)
chr1 (253-324)||(40779557-40779628)
chr1 (253-321)||(51088667-51088735)
chr1 (278-322)||(52087687-52087731)
[»] chr8 (5 HSPs)
chr8 (253-324)||(11080946-11081017)
chr8 (254-324)||(35462903-35462973)
chr8 (254-304)||(35462799-35462849)
chr8 (254-324)||(12820013-12820083)
chr8 (253-321)||(20066209-20066277)
[»] chr5 (9 HSPs)
chr5 (253-324)||(30916032-30916103)
chr5 (253-324)||(30915628-30915699)
chr5 (253-324)||(33362481-33362552)
chr5 (253-324)||(14357796-14357867)
chr5 (253-322)||(30674746-30674815)
chr5 (253-324)||(14356562-14356633)
chr5 (253-320)||(38603668-38603735)
chr5 (254-317)||(42962155-42962218)
chr5 (253-322)||(30673451-30673520)
[»] scaffold0065 (2 HSPs)
scaffold0065 (254-324)||(35494-35564)
scaffold0065 (261-324)||(36626-36689)
[»] chr7 (15 HSPs)
chr7 (253-323)||(22794237-22794307)
chr7 (254-322)||(29409154-29409222)
chr7 (254-324)||(19218895-19218965)
chr7 (254-320)||(42520353-42520419)
chr7 (255-324)||(4973646-4973715)
chr7 (254-315)||(29408378-29408439)
chr7 (253-324)||(29658528-29658599)
chr7 (255-310)||(32893590-32893645)
chr7 (254-317)||(47536771-47536834)
chr7 (255-324)||(4973963-4974032)
chr7 (253-321)||(24653584-24653652)
chr7 (260-324)||(29657128-29657192)
chr7 (254-320)||(40321201-40321267)
chr7 (284-321)||(36395975-36396012)
chr7 (268-324)||(46203568-46203624)
[»] scaffold0041 (2 HSPs)
scaffold0041 (253-324)||(1038-1109)
scaffold0041 (253-324)||(698-769)
[»] chr6 (6 HSPs)
chr6 (253-324)||(682396-682467)
chr6 (253-324)||(683456-683527)
chr6 (253-320)||(13562214-13562281)
chr6 (254-320)||(13561410-13561476)
chr6 (254-310)||(1757423-1757479)
chr6 (278-322)||(34995512-34995556)
[»] chr4 (15 HSPs)
chr4 (255-321)||(54372879-54372945)
chr4 (255-321)||(54373869-54373935)
chr4 (255-324)||(49923679-49923748)
chr4 (268-324)||(20944422-20944478)
chr4 (253-324)||(20945391-20945462)
chr4 (253-321)||(37642457-37642525)
chr4 (253-321)||(46425918-46425986)
chr4 (253-324)||(5547044-5547115)
chr4 (254-307)||(21570354-21570407)
chr4 (255-324)||(49922640-49922709)
chr4 (253-321)||(17521945-17522013)
chr4 (253-324)||(17522473-17522544)
chr4 (254-316)||(21569382-21569444)
chr4 (254-320)||(31204686-31204752)
chr4 (278-318)||(48499525-48499565)
[»] chr2 (4 HSPs)
chr2 (253-323)||(12364321-12364391)
chr2 (254-323)||(12365933-12366002)
chr2 (253-317)||(20921642-20921706)
chr2 (261-317)||(370906-370962)
[»] scaffold1337 (1 HSPs)
scaffold1337 (253-320)||(364-431)
[»] scaffold0081 (1 HSPs)
scaffold0081 (254-324)||(42921-42988)
[»] scaffold0026 (1 HSPs)
scaffold0026 (278-322)||(104412-104456)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 8895050 - 8895184
Alignment:
Q  18 gttatgacaccctaaagaacattatctcttttaaacccacaaattgtaccaagttgtaaaattgtacttgtttattaattgataagtactaataaaagtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8895050 gttatgacaccctaaagaacattatctcttttaaacccacaaattgtaccaagttgtaaaattgtacttgtttattaattgataagtactaataaaagtg 8895149  T
Q  118 ag-cttaattgaacatctaatcccataatttaatt 151  Q
    || ||||||||||||| | ||||| ||||||||||    
T  8895150 agacttaattgaacatatgatcccttaatttaatt 8895184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 467 - 564
Target Start/End: Original strand, 8895695 - 8895790
Alignment:
Q  467 atatcccttaaaacatgtaaaatatatatgcctttaaggatttagtgaaaagggattttggagtgaataaaaaatggtttcttctctctctttctctg 564  Q
    ||||||||||||||| |||||||||  ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  8895695 atatcccttaaaacaagtaaaatat--atgcctttagggatttagtgaaaaggggttttggagtgaataaaaaatggtttcttctttctctttctctg 8895790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 8895430 - 8895502
Alignment:
Q  396 aaagctaaaataaaattatattaaactctgaatattattcatatcactaatcagatccaccaaaaaataagat 468  Q
    ||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8895430 aaagctaaaattaaattaaattagactctgaatattattcatatcactaatcagatccgccaaaaaataagat 8895502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 8895287 - 8895358
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  8895287 aaaaaaggagatcatcggataaattaggtctatcagatctaaccgtgtatcaccaacacgtaatttatttta 8895358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 48338100 - 48338034
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    ||||||||||||||||||| || |||||||||||||||||| |||||||||||||| || |||||||    
T  48338100 aaaaggagaccgctggatatatgaggtctatcagatctaactgtgtatcaccaacacctgatttatt 48338034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 14206751 - 14206695
Alignment:
Q  268 tggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  14206751 tggataaatgaggtctatcagatctaactgtgtatcaccaatatctaatttatttta 14206695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 14214499 - 14214443
Alignment:
Q  268 tggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||    
T  14214499 tggataaatgaggtctatcagatctaactgtgtatcaccaatatctaatttatttta 14214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 46688536 - 46688607
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||| |||||||||||||||  ||||  |||| ||||||| |||||||||||||| |||||||||||||    
T  46688536 aaaaaagaagaccgctggataaagcaggttcatcatatctaactgtgtatcaccaacacctaatttatttta 46688607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 46690279 - 46690208
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||| |||||  ||||||||  |||| || || |||||||||||||||||||||| |||||||||||||    
T  46690279 aaaaaagaagaccattggataaaggaggtttaccatatctaaccgtgtatcaccaacacctaatttatttta 46690208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 48336480 - 48336535
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaaca 310  Q
    |||||||||||| ||||||||| |||| ||| ||||||||| ||||||||||||||    
T  48336480 aaaaggagaccgttggataaatgaggtttattagatctaactgtgtatcaccaaca 48336535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 2764071 - 2764003
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||| ||||||||  || ||| | |||||||||| |||||||||||||  |||||||||    
T  2764071 aaaaaaggagaccgttggataaaggagatctgtgagatctaaccatgtatcaccaacacttaatttatt 2764003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 50003200 - 50003141
Alignment:
Q  261 agaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| ||||||||  ||||| |||||||||||| ||||||||||||||  ||||||||    
T  50003200 agaccgttggataaaggaggtcaatcagatctaacggtgtatcaccaacacataatttat 50003141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 43394035 - 43393966
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    |||||| ||||||| ||||| |   ||||||||||||| | || |||||||||||||| |||||||||||    
T  43394035 aaaaaaagagaccgttggattacggaggtctatcagattttacagtgtatcaccaacacctaatttattt 43393966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 462
Target Start/End: Original strand, 49486056 - 49486085
Alignment:
Q  433 ttcatatcactaatcagatccaccaaaaaa 462  Q
    ||||||||||||||||||||||||||||||    
T  49486056 ttcatatcactaatcagatccaccaaaaaa 49486085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 2762920 - 2762988
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||| ||||||||  |||| | | |||||||| | ||||||||||| | ||||||||||    
T  2762920 aaaaaaggagaccgttggataaaagaggtatgtgagatctaatcatgtatcaccaatacctaatttatt 2762988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 44115568 - 44115636
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||| ||||||||  |||| | | |||||||| | ||||||||||| | ||||||||||    
T  44115568 aaaaaaggagaccgttggataaaggaggtttgtgagatctaatcatgtatcaccaatacctaatttatt 44115636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 45042741 - 45042811
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  45042741 aaaaaggagaccgttggataaatgaggtatatcagatctaaccgtgtatcatcaacatctaatttatttta 45042811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 49618562 - 49618633
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||  | ||||||||||    
T  49618562 aaaaaaggagaccgttggataaatgaggtctatcagatctaactgagtatcaccaacacttgatttatttta 49618633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 52439269 - 52439199
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||| || ||||||||| | |||||||||||||||| |||||||||||||| |||||||| ||||    
T  52439269 aaaaaggagatcgttggataaatgaagtctatcagatctaactgtgtatcaccaacacctaatttacttta 52439199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 49619803 - 49619732
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  | ||||||| ||||||||||||| |||| |||||||||||||| || ||||||||||    
T  49619803 aaaaaaggagaccattagataaatgaggtctatcagatttaactgtgtatcaccaacacctgatttatttta 49619732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 40778505 - 40778574
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||| ||||||||| |||||||| ||||||||| ||||||||||  || || ||||||||||    
T  40778505 aaaaggagaccgttggataaatgaggtctattagatctaactgtgtatcaccggcacctgatttatttta 40778574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 40779628 - 40779557
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||| | |||||||||| ||| |   |||||||||||||| || ||||||||||    
T  40779628 aaaaaaggagaccgttggataagtgaggtctatcatatcaatttgtgtatcaccaacacctgatttatttta 40779557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 51088667 - 51088735
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||| ||||||||  |||||| | | |||||| | |||||||||||||  |||||||||    
T  51088667 aaaaaaggagaccgttggataaaggaggtctgtgatatctaatcatgtatcaccaacacttaatttatt 51088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 322
Target Start/End: Complemental strand, 52087731 - 52087687
Alignment:
Q  278 aggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    |||||||||| || | || ||||||||||||||||||||||||||    
T  52087731 aggtctatcaaattttacggtgtatcaccaacatctaatttattt 52087687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 11081017 - 11080946
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  ||||||||| |||||||||||||||||| |||||||||||||| || ||||||||||    
T  11081017 aaaaaaggagacctttggataaatgaggtctatcagatctaactgtgtatcaccaacacctgatttatttta 11080946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 35462973 - 35462903
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||| || ||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||    
T  35462973 aaaaaggagatcgttggataaatgaggtctatctgatctaacagtgtatcaccaacacctaatttatttta 35462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 35462799 - 35462849
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatca 304  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  35462799 aaaaaggagaccgttggataaacgaggtctatcagatctaaccgtgtatca 35462849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 12820083 - 12820013
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||| |||||| ||||||||  ||||  |||| ||||||| |||||||||||||| |||||||||||||    
T  12820083 aaaaagaagaccgttggataaaggaggttcatcatatctaactgtgtatcaccaacacctaatttatttta 12820013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 20066209 - 20066277
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||| ||||||| ||||||||  || || ||||||| |||| |||||||||||||| ||||||||||    
T  20066209 aaaaaaagagaccgttggataaaagagatccatcagatttaacagtgtatcaccaacacctaatttatt 20066277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 30916103 - 30916032
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||    
T  30916103 aaaaaaggagaccattggataaattaggtctatcagatctaactgtgtattaccaacacctgatttatttta 30916032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 30915628 - 30915699
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  |||||| || |||||||||||||||||| |||||||||||||| || ||||||||||    
T  30915628 aaaaaaggagaccattggatatatgaggtctatcagatctaactgtgtatcaccaacacctgatttatttta 30915699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 33362552 - 33362481
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  ||||||||| |||||||||||||||||| |||||||||||| | || ||||||||||    
T  33362552 aaaaaaggagaccattggataaatgaggtctatcagatctaactgtgtatcaccaataccttatttatttta 33362481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 14357867 - 14357796
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||||| || ||||||| ||||||| |||||||||||||| || | ||||||||    
T  14357867 aaaaaaggagaccgttggataaatgagatctatcatatctaactgtgtatcaccaacacctgaattatttta 14357796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 30674815 - 30674746
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    |||||||||||||| || |||||  |||||| | |||||||||| ||||||||||||| |||||||||||    
T  30674815 aaaaaaggagaccgttgaataaaggaggtctgtaagatctaaccatgtatcaccaacacctaatttattt 30674746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 14356562 - 14356633
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||| ||||||  ||||| ||| |||||||||| ||||||  |||||||||||||| || ||||||||||    
T  14356562 aaaaaaagagaccattggatgaatgaggtctatcacatctaattgtgtatcaccaacacctgatttatttta 14356633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 38603735 - 38603668
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    ||||||| |||||| ||||||||  ||||| |||||||||||  |||||||||||||| || ||||||    
T  38603735 aaaaaagaagaccgttggataaagaaggtccatcagatctaatagtgtatcaccaacacctcatttat 38603668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 42962155 - 42962218
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatt 317  Q
    |||||| |||||| ||||||||  |||||||| ||||||||  |||||||||||||| ||||||    
T  42962155 aaaaagaagaccgttggataaaggaggtctataagatctaatggtgtatcaccaacacctaatt 42962218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 30673451 - 30673520
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    ||||| |||||||| ||||||||  |||| | | |||| ||||| ||||||||||||| |||||||||||    
T  30673451 aaaaagggagaccgttggataaaggaggtttgtgagatttaaccatgtatcaccaacacctaatttattt 30673520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 35494 - 35564
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||||||  ||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  35494 aaaaaggagaccattggataaatgaggtttatcagatctaactgtgtatcaccaacacctaatttatttta 35564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 36689 - 36626
Alignment:
Q  261 agaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||| ||  |||||| ||||||    
T  36689 agaccgttggataaatgaggtctatcagatctaactgtgtatcacccacgcctaattaatttta 36626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 22794307 - 22794237
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttt 323  Q
    ||||||||||| || ||||||||| |||||||||||||||||  ||||||||||||||||| |||||||||    
T  22794307 aaaaaaggagatcgttggataaatgaggtctatcagatctaattgtgtatcaccaacatctgatttatttt 22794237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 29409222 - 29409154
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    ||||||||||||| ||||||||| || ||||||||||||||| |||||| ||||||| |||||||||||    
T  29409222 aaaaaggagaccgttggataaatgagatctatcagatctaacagtgtataaccaacacctaatttattt 29409154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 19218965 - 19218895
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||||||| ||||||||  ||||| || |||| |||| |||||||||||||| |||||||||||||    
T  19218965 aaaaaggagaccgttggataaaagaggtccatgagatttaacagtgtatcaccaacacctaatttatttta 19218895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 42520353 - 42520419
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| |||||| ||||||||  |||||||||||||||||| ||||||||||||||  ||||||||    
T  42520353 aaaaagtagaccgttggataaaggaggtctatcagatctaacggtgtatcaccaacacataatttat 42520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 4973646 - 4973715
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||| ||||||| |||||| || |||||||||| ||||||| ||||||||||||||| | ||||||||||    
T  4973646 aaaatgagaccgttggatagatgaggtctatcatatctaactgtgtatcaccaacatgtgatttatttta 4973715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 29408378 - 29408439
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaa 315  Q
    |||||| |||||  ||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  29408378 aaaaagtagaccattggataaatgaggtctatcagatctaacggtgtatcaccaacacctaa 29408439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 29658599 - 29658528
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||  ||||||||| |||||||||||||||||  ||||| |||||||  || ||||||||||    
T  29658599 aaaaaaggagaccattggataaataaggtctatcagatctaattgtgtaccaccaacgcctgatttatttta 29658528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 32893590 - 32893645
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaaca 310  Q
    |||||||||||| ||||||| |  ||||||||||||||||| ||||||||||||||    
T  32893590 aaaaggagaccgttggataagtgtggtctatcagatctaactgtgtatcaccaaca 32893645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 47536834 - 47536771
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatt 317  Q
    |||||| |||||| ||||||||  |||||||||||||||||  |||||||||||||| ||||||    
T  47536834 aaaaagaagaccgttggataaaagaggtctatcagatctaatggtgtatcaccaacacctaatt 47536771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 4974032 - 4973963
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||| |||||| || || ||||||||||||||| |||||||||| |||  | ||||||||||    
T  4974032 aaaaggagaccgttggatagatgagatctatcagatctaactgtgtatcaccgacacatgatttatttta 4973963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 24653652 - 24653584
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||| ||||||||  ||||||   |||||||||| |||||||||||||  |||||||||    
T  24653652 aaaaaaggagaccgttggataaaggaggtctgggagatctaaccatgtatcaccaacacttaatttatt 24653584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 29657128 - 29657192
Alignment:
Q  260 gagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||| ||||||||| ||  |||||||||||||| |||||||||||||| || | ||||||||    
T  29657128 gagaccgttggataaatgagaactatcagatctaactgtgtatcaccaacacctgaattatttta 29657192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 40321201 - 40321267
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| |||||| ||||||||  ||||| || ||||||||| ||||||||||||||  ||||||||    
T  40321201 aaaaagaagaccgttggataaaggaggtccattagatctaacagtgtatcaccaacacataatttat 40321267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 36395975 - 36396012
Alignment:
Q  284 atcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  36395975 atcagatttaacagtgtatcaccaacatctaatttatt 36396012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 46203624 - 46203568
Alignment:
Q  268 tggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||  || ||||| | ||||||| ||||||||||||||||||||| ||||||    
T  46203624 tggataaaagagatctataaaatctaacggtgtatcaccaacatctaattaatttta 46203568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 1109 - 1038
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| || |||||| | || |||||||||||||||||||||||||||| | |||||||||||    
T  1109 aaaaaaggagaccgttgaataaatgaagtatatcagatctaaccgtgtatcaccaacaccaaatttatttta 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 698 - 769
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||||| | || ||||||||||||| || ||||||||||||| ||||| |||||    
T  698 aaaaaaggagaccgttggataaataaagtatatcagatctaactgtatatcaccaacatcaaatttgtttta 769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 682396 - 682467
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||  | ||||||||||    
T  682396 aaaaaaggagaccgttggataaatgaggtctatcagatctagctgtgtatcaccaacacttgatttatttta 682467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 683527 - 683456
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||| ||||||| || |||||| |||||||||||||||||| || |||| |||||| || ||||||||||    
T  683527 aaaaaaagagaccgttgaataaatgaggtctatcagatctaactgtatatctccaacacctgatttatttta 683456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 13562281 - 13562214
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    ||||||| |||| | ||||||||  || || |||||||||||| |||||||||||||| |||||||||    
T  13562281 aaaaaagaagactgttggataaaggagatccatcagatctaacagtgtatcaccaacacctaatttat 13562214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 13561410 - 13561476
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| ||| || ||||||||  ||||| |||||||||||  |||||||||||||| |||||||||    
T  13561410 aaaaagaagatcgttggataaagaaggtccatcagatctaatagtgtatcaccaacacctaatttat 13561476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 1757479 - 1757423
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaaca 310  Q
    |||||| |||||| |||||||| || ||  |||| ||||||||||||||||||||||    
T  1757479 aaaaagaagaccgttggataaagtaagttcatcatatctaaccgtgtatcaccaaca 1757423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 34995512 - 34995556
Alignment:
Q  278 aggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    ||||||||||||| | |  ||||||||||||||||||||||||||    
T  34995512 aggtctatcagattttatagtgtatcaccaacatctaatttattt 34995556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 54372879 - 54372945
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||| || |||||||    
T  54372879 aaaaggagaccgttggataaatgaggtctattagatctaactgtgtatcaccaacacctgatttatt 54372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 54373935 - 54373869
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    ||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| || |||||||    
T  54373935 aaaaggagaccactggataaatgaggtctataagatctaactgtgtatcaccaacacctgatttatt 54373869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 49923748 - 49923679
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||| |||||| || |||||||||||||||||| ||||||||||||||  | ||||||||||    
T  49923748 aaaaggagaccgttggatagatgaggtctatcagatctaactgtgtatcaccaacacgtgatttatttta 49923679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 20944422 - 20944478
Alignment:
Q  268 tggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    ||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||    
T  20944422 tggataaatgagatctattagatctaaccgtgtatcaccaacacctaatttatttta 20944478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 20945462 - 20945391
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||  ||||| ||||||||| || ||||| ||||||||| |||||||||||||| |||||||||||||    
T  20945462 aaaaaagaggaccgttggataaatgagttctattagatctaactgtgtatcaccaacacctaatttatttta 20945391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 37642525 - 37642457
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||||  ||||||||| |||| ||||||||||||  |||||||||||||| || |||||||    
T  37642525 aaaaaaggagaccattggataaatgaggtttatcagatctaattgtgtatcaccaacacctgatttatt 37642457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 46425986 - 46425918
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    |||||||||||| | ||||||||  ||||| ||||||| |||| |||||| ||||||||||||||||||    
T  46425986 aaaaaaggagactgttggataaaggaggtccatcagatttaacggtgtataaccaacatctaatttatt 46425918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 5547044 - 5547115
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||||||||||||| ||||||||| | |||||||||||||||  ||| |||||||||| |  ||||||||||    
T  5547044 aaaaaaggagaccgttggataaatgacgtctatcagatctaagtgtgaatcaccaacaccagatttatttta 5547115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 21570407 - 21570354
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcacca 307  Q
    |||||| |||||| ||||||||  ||||||||||||||||| ||||||||||||    
T  21570407 aaaaagaagaccgttggataaaggaggtctatcagatctaatcgtgtatcacca 21570354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 49922640 - 49922709
Alignment:
Q  255 aaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||| ||||||| |||||| || |||||||||||||||||| ||||| ||||||||  | ||||||||||    
T  49922640 aaaatgagaccgttggatagatgaggtctatcagatctaactgtgtagcaccaacacatgatttatttta 49922709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 17521945 - 17522013
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatt 321  Q
    ||||||| |||||  ||||||||  |||||||| ||||||||| ||||||||||||||  |||||||||    
T  17521945 aaaaaagaagaccattggataaacaaggtctatgagatctaacagtgtatcaccaacacttaatttatt 17522013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 17522544 - 17522473
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||| ||||||||| |||| |||  |||||||| ||||||||  |||||||||| ||| |||||||||||||    
T  17522544 aaaacaggagaccgttggaaaaaggaggtctataagatctaagagtgtatcaccgacacctaatttatttta 17522473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 21569382 - 21569444
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaat 316  Q
    |||||| |||||| ||||||||  ||||| |||||||||||| ||||||||| |||| |||||    
T  21569382 aaaaagaagaccgttggataaaggaggtccatcagatctaacagtgtatcactaacacctaat 21569444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 31204686 - 31204752
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| |||||| ||||||||  | ||| |||||||||||| ||||||||||||||  ||||||||    
T  31204686 aaaaagaagaccgttggataaaggatgtccatcagatctaacagtgtatcaccaacacataatttat 31204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 318
Target Start/End: Original strand, 48499525 - 48499565
Alignment:
Q  278 aggtctatcagatctaaccgtgtatcaccaacatctaattt 318  Q
    ||||||||||||| | || ||||||||||||||||||||||    
T  48499525 aggtctatcagattttacggtgtatcaccaacatctaattt 48499565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 12364321 - 12364391
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttt 323  Q
    |||||||| ||||  ||||||||| |||||||||||||||||| ||||||||||||||  |||||||||||    
T  12364321 aaaaaaggggaccattggataaatgaggtctatcagatctaactgtgtatcaccaacacataatttatttt 12364391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 12366002 - 12365933
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttt 323  Q
    |||| |||||||| ||||||||| || |||||||||| |||| |||||||||||||| || |||||||||    
T  12366002 aaaatggagaccgttggataaatgagatctatcagatataactgtgtatcaccaacacctgatttatttt 12365933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 20921642 - 20921706
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatt 317  Q
    |||||||||||| | ||||||||| |||||||||| ||||||| || ||||||||||| ||||||    
T  20921642 aaaaaaggagactgttggataaatgaggtctatcatatctaactgtatatcaccaacacctaatt 20921706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 370906 - 370962
Alignment:
Q  261 agaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatt 317  Q
    |||||| ||||||||| |||||||||| ||||||  |||||||||||||| ||||||    
T  370906 agaccgttggataaatgaggtctatcaaatctaatggtgtatcaccaacacctaatt 370962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1337 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold1337
Description:

Target: scaffold1337; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 364 - 431
Alignment:
Q  253 aaaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttat 320  Q
    |||||| | ||||| ||||||||| || ||| ||| |||||||||||||||||||||| |||||||||    
T  364 aaaaaatgtgaccgttggataaatgagatctgtcatatctaaccgtgtatcaccaacacctaatttat 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 42988 - 42921
Alignment:
Q  254 aaaaaggagaccgctggataaattaggtctatcagatctaaccgtgtatcaccaacatctaatttatttta 324  Q
    |||| |||||||| ||||||||   |||| || |||| |||| |||||||||||||| |||||||||||||    
T  42988 aaaatggagaccgttggataaa---ggtccatgagatttaacagtgtatcaccaacacctaatttatttta 42921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 104412 - 104456
Alignment:
Q  278 aggtctatcagatctaaccgtgtatcaccaacatctaatttattt 322  Q
    ||||||||||||| | |  ||||||||||||||||||||||||||    
T  104412 aggtctatcagattttatagtgtatcaccaacatctaatttattt 104456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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